- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x BEN: BENZAMIDINE(Non-functional Binders)
BEN.3: 3 residues within 4Å:- Chain A: N.60, N.61, L.62
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.60
BEN.9: 3 residues within 4Å:- Chain B: N.60, N.61, L.62
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.60
BEN.15: 3 residues within 4Å:- Chain C: N.60, N.61, L.62
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.60
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.4: 7 residues within 4Å:- Chain A: H.1, V.3, L.38, G.39, C.40, H.261, F.300
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.300
BME.5: 4 residues within 4Å:- Chain A: H.110, C.111, P.222, S.267
No protein-ligand interaction detected (PLIP)BME.10: 7 residues within 4Å:- Chain B: H.1, V.3, L.38, G.39, C.40, H.261, F.300
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.300
BME.11: 4 residues within 4Å:- Chain B: H.110, C.111, P.222, S.267
No protein-ligand interaction detected (PLIP)BME.16: 6 residues within 4Å:- Chain C: H.1, V.3, L.38, G.39, C.40, F.300
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.300
BME.17: 6 residues within 4Å:- Chain C: V.84, H.107, H.110, C.111, P.222, S.267
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.267
- 3 x X7A: [(5R)-5-amino-5-carboxy-7-(piperidin-1-yl)heptyl](trihydroxy)borate(1-)(Non-covalent)
X7A.6: 17 residues within 4Å:- Chain A: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, E.182, D.228, D.230, T.242, E.273
- Ligands: MN.1, MN.2
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:N.126, A:S.133, A:H.137, A:D.179
- Water bridges: A:D.124, A:S.133, A:S.133, A:S.133, A:N.135, A:G.138, A:G.138, A:T.242
- Salt bridges: A:D.177, A:D.179
X7A.12: 17 residues within 4Å:- Chain B: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, E.182, D.228, D.230, T.242, E.273
- Ligands: MN.7, MN.8
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:N.126, B:S.133, B:D.179, B:T.242, B:E.273
- Water bridges: B:D.124, B:S.133, B:S.133, B:S.133, B:G.138, B:G.138
- Salt bridges: B:D.177, B:D.179
X7A.18: 17 residues within 4Å:- Chain C: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, E.182, D.228, D.230, T.242, E.273
- Ligands: MN.13, MN.14
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:H.122, C:N.126, C:S.133, C:D.179, C:E.273, C:E.273
- Water bridges: C:D.124, C:T.131, C:S.133, C:S.133, C:S.133, C:N.135, C:G.138, C:D.230
- Salt bridges: C:D.177, C:D.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Van Zandt, M.C. et al., Discovery of (R)-2-Amino-6-borono-2-(2-(piperidin-1-yl)ethyl)hexanoic Acid and Congeners As Highly Potent Inhibitors of Human Arginases I and II for Treatment of Myocardial Reperfusion Injury. J.Med.Chem. (2013)
- Release Date
- 2013-03-20
- Peptides
- Arginase-2, mitochondrial: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x BEN: BENZAMIDINE(Non-functional Binders)
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 3 x X7A: [(5R)-5-amino-5-carboxy-7-(piperidin-1-yl)heptyl](trihydroxy)borate(1-)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Van Zandt, M.C. et al., Discovery of (R)-2-Amino-6-borono-2-(2-(piperidin-1-yl)ethyl)hexanoic Acid and Congeners As Highly Potent Inhibitors of Human Arginases I and II for Treatment of Myocardial Reperfusion Injury. J.Med.Chem. (2013)
- Release Date
- 2013-03-20
- Peptides
- Arginase-2, mitochondrial: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C