SMTL ID : 4i15.1

Crystal structure of TbrPDEB1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.98, H.134, D.135, D.247 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.98, A:H.134, A:D.135, A:D.247, H2O.1, H2O.1 ZN.3: 5 residues within 4Å: Chain B: H.98, H.134, D.135, D.247 Ligands: MG.4 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.98, B:H.134, B:D.135, B:D.247, H2O.10, H2O.10

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.135 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.135, H2O.1, H2O.1, H2O.1, H2O.1, H2O.1 MG.4: 2 residues within 4Å: Chain B: D.135 Ligands: ZN.3 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.135, H2O.10, H2O.10, H2O.10, H2O.10, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jansen, C. et al., Discovery of Novel Trypanosoma brucei Phosphodiesterase B1 Inhibitors by Virtual Screening against the Unliganded TbrPDEB1 Crystal Structure. J.Med.Chem. (2013)

Release Date

2013-03-13

Peptides

Class 1 phosphodiesterase PDEB1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Class 1 phosphodiesterase PDEB1