SMTL ID : 4i1u.1

Apo crystal structure of a dephospho-CoA kinase from Burkholderia vietnamiensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.17, I.18, G.19, S.20, G.21, K.22, T.23, R.152 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.17, A:G.19, A:S.20, A:G.21, A:K.22, A:T.23 Water bridges: A:R.152 Salt bridges: A:K.22, A:R.152 SO4.2: 3 residues within 4Å: Chain A: R.88, R.89, E.92 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.88, A:R.89 SO4.3: 4 residues within 4Å: Chain A: R.105, R.108 Chain B: R.45, L.52 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.45, A:R.105, A:R.108 SO4.5: 4 residues within 4Å: Chain B: H.96, R.100, S.125, W.128 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.125, B:W.128 Water bridges: B:R.100 Salt bridges: B:H.96, B:R.100 SO4.6: 8 residues within 4Å: Chain B: G.17, I.18, G.19, S.20, G.21, K.22, T.23, R.152 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.19, B:S.20, B:G.21, B:K.22, B:T.23, B:T.23 Water bridges: B:G.21 Salt bridges: B:K.22, B:R.152 SO4.7: 4 residues within 4Å: Chain B: S.35, A.110, Q.111, G.112 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.35, B:Q.111, B:G.112 SO4.8: 1 residues within 4Å: Chain B: R.76 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.76 SO4.9: 1 residues within 4Å: Chain B: R.134 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.134 SO4.10: 2 residues within 4Å: Chain B: R.148, D.184 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.148, B:R.148 Salt bridges: B:R.148 SO4.11: 3 residues within 4Å: Chain B: R.88, R.89, E.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.92 Salt bridges: B:R.88, B:R.89

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: R.45, I.46, G.51, L.52 Chain B: R.108 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 6 residues within 4Å: Chain B: Q.145, I.164, Q.167, A.168, R.170, R.173 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.145, B:Q.145, B:Q.167, B:A.168, B:R.173, B:R.173 Water bridges: B:G.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Apo crystal structure of a dephospho-CoA kinase from Burkholderia vietnamiensis. TO BE PUBLISHED

Release Date

2013-01-09

Peptides

Dephospho-CoA kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dephospho-CoA kinase

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