SMTL ID : 4i9k.1

Crystal structure of symmetric W-W-W ClpX Hexamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 5.00 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.61, S.62, G.63, K.64, T.65 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.61, A:S.62, A:G.63, A:K.64, A:T.65, A:T.65 Salt bridges: A:K.64 SO4.2: 2 residues within 4Å: Chain A: A.308 Chain D: R.246 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.246 SO4.3: 2 residues within 4Å: Chain A: R.246 Chain B: A.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.246 SO4.4: 6 residues within 4Å: Chain B: G.61, S.62, G.63, K.64, T.65, L.66 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.61, B:S.62, B:G.63, B:K.64, B:T.65, B:L.66 Salt bridges: B:K.64 SO4.5: 5 residues within 4Å: Chain C: G.61, S.62, G.63, K.64, T.65 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.61, C:S.62, C:G.63, C:K.64, C:T.65, C:T.65 Salt bridges: C:K.64 SO4.6: 2 residues within 4Å: Chain C: A.308 Chain F: R.246 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.246 SO4.7: 2 residues within 4Å: Chain C: R.246 Chain D: A.308 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.246 SO4.8: 6 residues within 4Å: Chain D: G.61, S.62, G.63, K.64, T.65, L.66 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.61, D:S.62, D:G.63, D:K.64, D:T.65, D:L.66 Salt bridges: D:K.64 SO4.9: 5 residues within 4Å: Chain E: G.61, S.62, G.63, K.64, T.65 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:G.61, E:S.62, E:G.63, E:K.64, E:T.65, E:T.65 Salt bridges: E:K.64 SO4.10: 2 residues within 4Å: Chain B: R.246 Chain E: A.308 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.246 SO4.11: 2 residues within 4Å: Chain E: R.246 Chain F: A.308 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.246 SO4.12: 6 residues within 4Å: Chain F: G.61, S.62, G.63, K.64, T.65, L.66 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:G.61, F:S.62, F:G.63, F:K.64, F:T.65, F:L.66 Salt bridges: F:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stinson, B.M. et al., Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine. Cell(Cambridge,Mass.) (2013)

Release Date

2013-05-15

Peptides

ATP-dependent Clp protease ATP-binding subunit ClpX: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

ATP-dependent Clp protease ATP-binding subunit ClpX

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