SMTL ID : 4ibd.2 (1 other biounit)

Ebola virus VP35 bound to small molecule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 1DL: 5-[(2R)-3-benzoyl-2-(4-bromothiophen-2-yl)-4-hydroxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]-2-methylbenzoic acid(Non-covalent)

1DL.1: 11 residues within 4Å: Chain A: A.10, Q.30, Q.33, C.36, K.37, K.40, P.82, I.84, I.86, D.91, F.117 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.10, A:K.37, A:K.40, A:I.84, A:I.86, A:F.117 Hydrogen bonds: A:Q.30 Water bridges: A:Q.33, A:Q.33, A:Q.33 Salt bridges: A:K.37, A:K.40

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: D.60, S.61, C.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.61, A:S.61

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: L.21, P.22, G.23 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:L.21, A:G.23, H2O.1, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, C.S. et al., In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol. (2014)

Release Date

2014-03-19

Peptides

Polymerase cofactor VP35: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Polymerase cofactor VP35

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