SMTL ID : 4ic1.1

Crystal structure of SSO0001

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-10-mer

Ligands

10 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.66, D.103, E.117, I.118, K.119 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:D.103, A:E.117, A:I.118, H2O.2 MN.3: 5 residues within 4Å: Chain B: H.66, D.103, E.117, I.118, K.119 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.66, B:D.103, B:E.117, B:I.118, H2O.5 MN.5: 5 residues within 4Å: Chain C: H.66, D.103, E.117, I.118, K.119 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.66, C:D.103, C:E.117, C:I.118 MN.7: 5 residues within 4Å: Chain D: H.66, D.103, E.117, I.118, K.119 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.66, D:D.103, D:E.117, D:I.118, H2O.7 MN.9: 4 residues within 4Å: Chain E: H.66, D.103, E.117, I.118 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.66, E:D.103, E:E.117, E:I.118, H2O.8 MN.11: 4 residues within 4Å: Chain F: H.66, D.103, E.117, I.118 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.66, F:D.103, F:E.117, F:I.118, H2O.9 MN.13: 4 residues within 4Å: Chain G: H.66, D.103, E.117, I.118 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.66, G:D.103, G:E.117, G:I.118, H2O.10 MN.15: 5 residues within 4Å: Chain H: H.66, D.103, E.117, I.118, K.119 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.66, H:D.103, H:E.117, H:I.118 MN.17: 4 residues within 4Å: Chain I: H.66, D.103, E.117, I.118 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.66, I:D.103, I:E.117, I:I.118 MN.19: 5 residues within 4Å: Chain J: H.66, D.103, E.117, I.118, K.119 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.66, J:D.103, J:E.117, J:I.118

10 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 7 residues within 4Å: Chain A: C.36, R.38, R.39, C.192, C.195, S.198, C.201 5 PLIP interactions: 5 interactions with chain A, Salt bridges: A:E.191 Metal complexes: A:C.36, A:C.192, A:C.195, A:C.201 SF4.4: 7 residues within 4Å: Chain B: C.36, R.39, P.186, C.192, C.195, S.198, C.201 5 PLIP interactions: 5 interactions with chain B, Salt bridges: B:E.191 Metal complexes: B:C.36, B:C.192, B:C.195, B:C.201 SF4.6: 7 residues within 4Å: Chain C: C.36, R.38, R.39, C.192, C.195, S.198, C.201 5 PLIP interactions: 5 interactions with chain C, Salt bridges: C:E.191 Metal complexes: C:C.36, C:C.192, C:C.195, C:C.201 SF4.8: 7 residues within 4Å: Chain D: C.36, R.39, C.192, C.195, S.198, C.201, K.204 5 PLIP interactions: 5 interactions with chain D, Salt bridges: D:E.191 Metal complexes: D:C.36, D:C.192, D:C.195, D:C.201 SF4.10: 6 residues within 4Å: Chain E: C.36, R.39, C.192, C.195, S.198, C.201 5 PLIP interactions: 5 interactions with chain E, Salt bridges: E:E.191 Metal complexes: E:C.36, E:C.192, E:C.195, E:C.201 SF4.12: 5 residues within 4Å: Chain F: C.36, R.39, C.192, C.195, C.201 5 PLIP interactions: 5 interactions with chain F, Salt bridges: F:E.191 Metal complexes: F:C.36, F:C.192, F:C.195, F:C.201 SF4.14: 10 residues within 4Å: Chain G: C.36, R.38, R.39, P.186, E.191, C.192, C.195, S.198, C.201, K.204 5 PLIP interactions: 5 interactions with chain G, Salt bridges: G:E.191 Metal complexes: G:C.36, G:C.192, G:C.195, G:C.201 SF4.16: 7 residues within 4Å: Chain H: C.36, R.38, R.39, P.186, C.192, C.195, C.201 5 PLIP interactions: 5 interactions with chain H, Salt bridges: H:E.191 Metal complexes: H:C.36, H:C.192, H:C.195, H:C.201 SF4.18: 6 residues within 4Å: Chain I: C.36, R.39, C.192, C.195, C.201, K.204 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.191 Metal complexes: I:C.36, I:C.192, I:C.195, I:C.201 SF4.20: 6 residues within 4Å: Chain J: C.36, R.39, C.192, C.195, C.201, K.204 5 PLIP interactions: 5 interactions with chain J, Salt bridges: J:E.191 Metal complexes: J:C.36, J:C.192, J:C.195, J:C.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lemak, S. et al., Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus. J.Am.Chem.Soc. (2013)

Release Date

2013-01-16

Peptides

Uncharacterized protein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

F
G

G
H

H
I

I
J

J
K

Uncharacterized protein