SMTL ID : 4ie3.2 (3 other biounits)

Crystal structure of human Arginase-2 complexed with inhbitor 1o

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.97, D.120, D.124, D.228 Ligands: MN.2, 1EE.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.97, A:D.120, A:D.124, A:D.228 MN.2: 6 residues within 4Å: Chain A: D.120, H.122, D.228, D.230 Ligands: MN.1, 1EE.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.120, A:H.122, A:D.228, A:D.230, A:D.230

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.3: 3 residues within 4Å: Chain A: N.60, N.61, L.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.60

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 5 residues within 4Å: Chain A: H.1, L.38, C.40, H.261, F.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.300

1 x 1EE: [(5R)-5-amino-5-carboxy-7-(4-hydroxypiperidin-1-yl)heptyl](trihydroxy)borate(1-)(Non-covalent)

1EE.5: 17 residues within 4Å: Chain A: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, E.182, D.228, D.230, T.242, E.273 Ligands: MN.1, MN.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.126, A:S.133, A:H.137, A:D.179 Water bridges: A:D.124, A:T.131, A:T.131, A:S.133, A:S.133, A:N.135, A:G.138, A:D.179, A:T.242 Salt bridges: A:D.177, A:D.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golebiowski, A. et al., 2-Substituted-2-amino-6-boronohexanoic acids as arginase inhibitors. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-03-20

Peptides

Arginase-2, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Arginase-2, mitochondrial

Related Entries With Identical Sequence