SMTL ID : 4iee.1

Crystal Structure of the large terminase subunit gp2 of bacterial virus Sf6 complexed with ATP-r-S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.49, E.138 Ligands: AGS.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.49, H2O.10, H2O.14, H2O.15

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 13 residues within 4Å: Chain A: G.43, R.44, G.45, S.46, G.47, K.48, S.49, W.50, N.167, N.197, H.199, P.201 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.45, A:S.46, A:G.47, A:K.48, A:K.48, A:S.49, A:W.50, A:N.167, A:N.197, A:H.199 Water bridges: A:S.49, A:S.49, A:S.49, A:S.49, A:W.50, A:E.138 Salt bridges: A:K.48 pi-Stacking: A:W.50, A:W.50, A:W.50, A:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H. et al., Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-05-01

Peptides

Gene 2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gene 2 protein

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