SMTL ID : 4if4.3 (2 other biounits)

Crystal Structure of the Magnesium and beryllofluoride-activated VraR from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.9, D.54, L.56 Ligands: BEF.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.9, A:D.54, A:L.56, H2O.1, H2O.1 MG.4: 4 residues within 4Å: Chain B: D.9, D.54, L.56 Ligands: BEF.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.9, B:D.54, B:L.56, H2O.3, H2O.3

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)

BEF.2: 8 residues within 4Å: Chain A: D.54, L.55, L.56, T.82, S.83, F.84, K.104 Ligands: MG.1 No protein-ligand interaction detected (PLIP) BEF.5: 9 residues within 4Å: Chain B: D.9, D.54, L.55, L.56, T.82, S.83, F.84, K.104 Ligands: MG.4 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: H.44, K.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.44 Salt bridges: A:H.44, A:K.47 SO4.6: 2 residues within 4Å: Chain B: H.44, K.47 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.44, B:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonard, P.G. et al., Phosphorylation-dependent conformational changes and domain rearrangements in Staphylococcus aureus VraR activation. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-05-08

Peptides

Response regulator protein VraR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Response regulator protein VraR

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