SMTL ID : 4igl.1 (1 other biounit)

Structure of the RHS-repeat containing BC component of the secreted ABC toxin complex from Yersinia entomophaga

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.793, V.817, E.834 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.834 GOL.2: 9 residues within 4Å: Chain A: L.770, D.798, D.800, T.811, H.812, P.813, S.814, K.1414, P.1450 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.812 Water bridges: A:D.800, A:H.812, A:D.1449

3 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain A: D.624, D.626, S.628, T.630, D.632 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.624, A:D.626, A:S.628, A:D.632, A:D.632 K.4: 5 residues within 4Å: Chain A: N.1202, N.1204, T.1224 Chain B: K.163, N.166 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:N.1202, A:T.1224, B:K.163 K.5: 4 residues within 4Å: Chain A: D.1481 Chain B: T.9, S.370, Y.372 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:T.9, B:T.9, A:D.1481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Busby, J.N. et al., The BC component of ABC toxins is an RHS-repeat-containing protein encapsulation device. Nature (2013)

Release Date

2013-08-07

Peptides

YenB: A
YenC2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YenB

YenC2

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