SMTL ID : 4ihg.1 (1 other biounit)

Chasing Acyl Carrier Protein Through a Catalytic Cycle of Lipid A Production

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-oligomer

Ligands

4 x FTT: 3-HYDROXY-TETRADECANOIC ACID(Non-covalent)

FTT.1: 22 residues within 4Å: Chain A: F.190, D.223, Q.243, A.245, H.246, I.261, M.262, A.263, G.264, V.279, I.280, N.281, M.297, V.298, M.299 Chain C: D.239, A.257, G.258, G.276, G.294, M.295 Ligands: PNS.7 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.190, A:N.281 Hydrogen bonds: A:F.190, A:D.223, A:Q.243, A:G.264 Salt bridges: A:H.246 FTT.2: 22 residues within 4Å: Chain A: D.239, A.257, G.258, G.276, A.277, G.294, M.295 Chain B: F.190, Q.243, A.245, H.246, I.261, M.262, A.263, G.264, V.279, I.280, N.281, M.297, V.298, M.299 Ligands: PNS.5 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.190, B:V.279, B:N.281 Hydrogen bonds: B:F.190, B:Q.243, B:G.264 Salt bridges: B:H.246 FTT.3: 17 residues within 4Å: Chain B: I.237, A.255, V.256, A.257, M.273, I.274, G.275, T.291, V.292, T.293, G.294, V.307 Chain C: F.190, G.191, Y.192, W.199 Ligands: PNS.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.255, B:A.257, B:M.273, B:T.291 FTT.4: 23 residues within 4Å: Chain B: D.239, A.257, G.258, G.276, A.277, G.294, M.295 Chain C: F.190, D.223, Q.243, A.245, H.246, I.261, M.262, A.263, G.264, V.279, I.280, N.281, M.297, V.298, M.299 Ligands: PNS.6 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.190, C:I.261, C:N.281 Hydrogen bonds: C:F.190, C:Q.243, C:G.264 Water bridges: C:H.246 Salt bridges: C:H.246

3 x PNS: 4'-PHOSPHOPANTETHEINE(Covalent)

PNS.5: 14 residues within 4Å: Chain A: A.257, G.275, G.276, T.293, G.294 Chain B: F.190, A.263, N.281, M.299 Chain C: N.317, W.320, R.321 Chain D: S.39 Ligands: FTT.2 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:N.317, A:G.276, A:G.294, B:N.281 Salt bridges: C:R.321 PNS.6: 16 residues within 4Å: Chain A: N.317, W.320, R.321 Chain B: A.257, G.275, G.276, T.293, G.294 Chain C: F.190, A.263, N.281, M.297, M.299 Chain E: S.39 Ligands: FTT.3, FTT.4 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.276, B:G.294, A:N.317 Salt bridges: A:R.321 PNS.7: 16 residues within 4Å: Chain A: F.190, A.263, N.281, M.297, M.299 Chain B: N.317, W.320, R.321 Chain C: A.257, G.275, G.276, T.293, G.294 Chain F: D.38, S.39 Ligands: FTT.1 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.276, C:G.294, B:N.317 Salt bridges: B:R.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masoudi, A. et al., Chasing acyl carrier protein through a catalytic cycle of lipid A production. Nature (2014)

Release Date

2013-11-13

Peptides

UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase: ABC
Acyl carrier protein: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

E
H

F
I

UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase

Acyl carrier protein

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