SMTL ID : 4ilk.1

Crystal structure of short chain alcohol dehydrogenase (rspB) from E. coli CFT073 (EFI TARGET EFI-506413) complexed with cofactor NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 21 residues within 4Å: Chain A: I.168, Y.187, G.188, G.190, P.191, I.192, A.212, D.213, R.214, I.215, R.218, N.233, A.255, A.256, C.257, I.261, M.278, F.280, S.302, R.303, L.304 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.192 Hydrogen bonds: A:G.188, A:G.190, A:I.192, A:R.214, A:R.214, A:R.218, A:N.233, A:A.256, A:S.302, A:L.304 Water bridges: A:G.58, A:G.58, A:G.193, A:R.218 Salt bridges: A:R.218 pi-Cation interactions: A:R.214 NAI.4: 20 residues within 4Å: Chain B: I.168, Y.187, G.188, G.190, P.191, I.192, A.212, D.213, R.214, R.218, N.233, A.255, A.256, C.257, I.261, M.278, F.280, S.302, R.303, L.304 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:I.168, B:I.192 Hydrogen bonds: B:G.188, B:G.190, B:I.192, B:R.218, B:N.233, B:A.256, B:S.302, B:L.304 Water bridges: B:G.58, B:G.193, B:R.214, B:R.214, B:R.214 Salt bridges: B:R.218

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: C.57, H.79, E.80, E.164 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.79, A:E.80, A:E.164, H2O.2, H2O.3 MN.5: 4 residues within 4Å: Chain B: C.57, H.79, E.80, E.164 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.79, B:E.80, B:E.164, H2O.10, H2O.11

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.109, G.110, C.112, C.115, C.123 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.109, A:C.112, A:C.115, A:C.123 ZN.6: 5 residues within 4Å: Chain B: C.109, G.110, C.112, C.115, C.123 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.109, B:C.112, B:C.115, B:C.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wichelecki, S. et al., Crystal structure of short chain alcohol dehydrogenase (rspB) from E. coli CFT073 (EFI TARGET EFI-506413) complexed with cofactor NADH. To be Published

Release Date

2013-01-30

Peptides

Starvation sensing protein rspB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Starvation sensing protein rspB