SMTL ID : 4im7.1

Crystal structure of fructuronate reductase (ydfI) from E. coli CFT073 (EFI TARGET EFI-506389) complexed with NADH and D-mannonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CS2: D-MANNONIC ACID(Non-covalent)

CS2.1: 12 residues within 4Å: Chain A: N.204, D.243, R.244, K.308, L.312, N.313, H.316, H.381, I.386, K.393, R.397 Ligands: NAI.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.204, A:D.243, A:R.244, A:K.308, A:N.313, A:H.316, A:R.397, A:R.397 Water bridges: A:H.381, A:Q.385, A:K.393, A:K.393 Salt bridges: A:K.393, A:R.397

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.2: 21 residues within 4Å: Chain A: G.48, F.49, G.50, A.51, F.52, N.78, I.80, G.81, G.82, T.143, I.144, T.145, E.146, G.148, D.203, N.204, V.242, R.244, I.245, V.246 Ligands: CS2.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:F.52, A:V.242 Hydrogen bonds: A:F.49, A:A.51, A:F.52, A:N.78, A:G.81, A:Q.85, A:N.204, A:N.204, A:V.246, A:V.246 Water bridges: A:G.48, A:H.53, A:I.80, A:E.146, A:E.146, A:G.148, A:V.246, A:Q.385, A:Q.385, A:Q.385 pi-Stacking: A:F.52

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: Y.324, Q.329, R.382, W.384 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.329 Salt bridges: A:R.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wichelecki, S. et al., Crystal structure of fructuronate reductase (ydfI) from E. coli CFT073 (EFI TARGET EFI-506389) complexed with NADH and D-mannonate. To be Published

Release Date

2013-01-23

Peptides

Hypothetical oxidoreductase ydfI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypothetical oxidoreductase ydfI