SMTL ID : 4ivn.1

The Vibrio vulnificus NanR protein complexed with ManNAc-6P

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x BMX: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose(Non-covalent)

BMX.1: 15 residues within 4Å: Chain A: V.135, G.136, A.137, S.138, S.182, S.183, S.184, T.187, G.230, P.231, G.234 Chain B: Y.147, R.151, V.272, M.276 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.137, A:S.138, A:S.138, A:S.183, A:S.184, A:S.184, A:T.187, B:Y.147, B:R.151 Water bridges: A:S.183, A:E.229, A:E.229, A:G.234 Salt bridges: A:K.240 BMX.2: 15 residues within 4Å: Chain A: Y.147, R.151, V.272, M.276 Chain B: V.135, G.136, A.137, S.138, S.182, S.183, S.184, T.187, G.230, P.231, G.234 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:A.137, B:S.138, B:S.138, B:S.183, B:S.184, B:S.184, B:T.187, B:G.234, A:Y.147, A:R.151 Water bridges: B:V.135, B:S.138, B:S.183, B:E.229, B:G.235, A:R.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hwang, J. et al., Structural insights into the regulation of sialic acid catabolism by the Vibrio vulnificus transcriptional repressor NanR. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-07-17

Peptides

Transcriptional regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator