- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x GLU: GLUTAMIC ACID(Non-covalent)
GLU.2: 8 residues within 4Å:- Chain A: R.116, R.122, Q.125, L.126, R.129
- Chain D: R.98, M.102, V.112
6 PLIP interactions:6 interactions with chain A,- Hydrophobic interactions: A:R.122, A:L.126
- Hydrogen bonds: A:R.122
- Salt bridges: A:R.116, A:R.122, A:R.129
GLU.10: 8 residues within 4Å:- Chain B: R.116, R.122, Q.125, L.126, R.129
- Chain C: R.98, M.102, V.112
6 PLIP interactions:6 interactions with chain B,- Hydrophobic interactions: B:R.122, B:L.126
- Hydrogen bonds: B:R.122
- Salt bridges: B:R.116, B:R.122, B:R.129
GLU.18: 8 residues within 4Å:- Chain B: R.98, M.102, V.112
- Chain C: R.116, R.122, Q.125, L.126, R.129
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:R.122, C:L.126
- Hydrogen bonds: C:R.122
- Salt bridges: C:R.116, C:R.122, C:R.129
GLU.26: 8 residues within 4Å:- Chain A: R.98, M.102, V.112
- Chain D: R.116, R.122, Q.125, L.126, R.129
6 PLIP interactions:6 interactions with chain D,- Hydrophobic interactions: D:R.122, D:L.126
- Hydrogen bonds: D:R.122
- Salt bridges: D:R.116, D:R.122, D:R.129
- 24 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 7 residues within 4Å:- Chain A: R.209, L.234, N.282, S.284, P.285, G.286
- Ligands: SO4.5
Ligand excluded by PLIPSO4.4: 6 residues within 4Å:- Chain A: T.87, R.118, K.120, N.282, A.283, S.284
Ligand excluded by PLIPSO4.5: 6 residues within 4Å:- Chain A: Y.33, L.234, G.286, E.288, G.289
- Ligands: SO4.3
Ligand excluded by PLIPSO4.6: 3 residues within 4Å:- Chain A: Y.70, K.71, R.73
Ligand excluded by PLIPSO4.7: 3 residues within 4Å:- Chain A: S.66, S.67, K.74
Ligand excluded by PLIPSO4.8: 2 residues within 4Å:- Chain A: R.304, R.308
Ligand excluded by PLIPSO4.11: 7 residues within 4Å:- Chain B: R.209, L.234, N.282, S.284, P.285, G.286
- Ligands: SO4.13
Ligand excluded by PLIPSO4.12: 6 residues within 4Å:- Chain B: T.87, R.118, K.120, N.282, A.283, S.284
Ligand excluded by PLIPSO4.13: 6 residues within 4Å:- Chain B: Y.33, L.234, G.286, E.288, G.289
- Ligands: SO4.11
Ligand excluded by PLIPSO4.14: 3 residues within 4Å:- Chain B: Y.70, K.71, R.73
Ligand excluded by PLIPSO4.15: 3 residues within 4Å:- Chain B: S.66, S.67, K.74
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain B: R.304, R.308
Ligand excluded by PLIPSO4.19: 7 residues within 4Å:- Chain C: R.209, L.234, N.282, S.284, P.285, G.286
- Ligands: SO4.21
Ligand excluded by PLIPSO4.20: 6 residues within 4Å:- Chain C: T.87, R.118, K.120, N.282, A.283, S.284
Ligand excluded by PLIPSO4.21: 6 residues within 4Å:- Chain C: Y.33, L.234, G.286, E.288, G.289
- Ligands: SO4.19
Ligand excluded by PLIPSO4.22: 3 residues within 4Å:- Chain C: Y.70, K.71, R.73
Ligand excluded by PLIPSO4.23: 3 residues within 4Å:- Chain C: S.66, S.67, K.74
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain C: R.304, R.308
Ligand excluded by PLIPSO4.27: 7 residues within 4Å:- Chain D: R.209, L.234, N.282, S.284, P.285, G.286
- Ligands: SO4.29
Ligand excluded by PLIPSO4.28: 6 residues within 4Å:- Chain D: T.87, R.118, K.120, N.282, A.283, S.284
Ligand excluded by PLIPSO4.29: 6 residues within 4Å:- Chain D: Y.33, L.234, G.286, E.288, G.289
- Ligands: SO4.27
Ligand excluded by PLIPSO4.30: 3 residues within 4Å:- Chain D: Y.70, K.71, R.73
Ligand excluded by PLIPSO4.31: 3 residues within 4Å:- Chain D: S.66, S.67, K.74
Ligand excluded by PLIPSO4.32: 2 residues within 4Å:- Chain D: R.304, R.308
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, G. et al., Structure and function of Escherichia coli RimK, an ATP-grasp fold, l-glutamyl ligase enzyme. Proteins (2013)
- Release Date
- 2013-05-08
- Peptides
- Ribosomal protein S6 modification protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x GLU: GLUTAMIC ACID(Non-covalent)
- 24 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, G. et al., Structure and function of Escherichia coli RimK, an ATP-grasp fold, l-glutamyl ligase enzyme. Proteins (2013)
- Release Date
- 2013-05-08
- Peptides
- Ribosomal protein S6 modification protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A