SMTL ID : 4j0b.1

Structure of mitochondrial Hsp90 (TRAP1) with ADP-BeF3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 2 residues within 4Å: Chain A: D.20, N.23 No protein-ligand interaction detected (PLIP) CO.2: 2 residues within 4Å: Chain A: L.130, N.132 No protein-ligand interaction detected (PLIP) CO.6: 1 residues within 4Å: Chain B: S.431 No protein-ligand interaction detected (PLIP) CO.7: 1 residues within 4Å: Chain B: D.20 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 21 residues within 4Å: Chain A: N.62, A.66, K.69, D.101, G.105, M.106, N.114, L.115, S.121, G.122, S.123, G.142, Q.143, F.144, G.145, V.146, G.147, F.148, T.194 Ligands: BEF.4, MG.5 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.62, A:K.69, A:K.69, A:D.101, A:S.121, A:G.122, A:S.123, A:G.142, A:F.144, A:G.145, A:V.146, A:F.148, A:T.194 Water bridges: A:A.66, A:D.101, A:G.105, A:N.114, A:N.114, A:S.123, A:S.123 ADP.8: 22 residues within 4Å: Chain B: N.62, A.66, K.69, D.101, G.105, M.106, N.114, L.115, R.120, S.121, G.122, S.123, G.142, Q.143, F.144, G.145, V.146, G.147, F.148, T.194 Ligands: BEF.9, MG.10 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:N.62, B:K.69, B:K.69, B:D.101, B:N.114, B:S.121, B:G.122, B:S.123, B:G.142, B:F.144, B:G.145, B:V.146, B:G.147, B:F.148 Water bridges: B:A.66, B:G.105, B:S.123, B:S.123, B:T.194

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.4: 10 residues within 4Å: Chain A: E.58, G.142, Q.143, F.144, G.145, V.146, G.147, R.345 Ligands: ADP.3, MG.5 No protein-ligand interaction detected (PLIP) BEF.9: 11 residues within 4Å: Chain B: E.58, N.62, G.142, Q.143, F.144, G.145, V.146, G.147, R.345 Ligands: ADP.8, MG.10 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain A: E.58, N.62 Ligands: ADP.3, BEF.4 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain B: N.62 Ligands: ADP.8, BEF.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lavery, L.A. et al., Structural asymmetry in the closed state of mitochondrial Hsp90 (TRAP1) supports a two-step ATP hydrolysis mechanism. Mol.Cell (2014)

Release Date

2014-01-22

Peptides

TNF receptor-associated protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TNF receptor-associated protein 1

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