Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 4j3f.2
(5 other biounits)
Crystal Structure of FabI from F. tularensis in complex with novel inhibitors based on the benzimidazole scaffold.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-dimer
Ligands
2 x
1JT
:
1-(4-methoxy-3-methylbenzyl)-5,6,7,8-tetrahydro-1H-naphtho[2,3-d]imidazole
(Non-covalent)
1JT.1:
13 residues within 4Å:
Chain A:
A.112
,
F.113
,
A.114
,
Y.166
,
M.173
,
P.174
,
S.175
,
Y.176
,
A.216
,
I.220
,
F.223
,
M.226
Ligands:
NAD.2
10
PLIP interactions
:
10 interactions with chain A
Hydrophobic interactions:
A:A.112
,
A:Y.166
,
A:Y.176
,
A:A.216
,
A:I.220
,
A:I.220
,
A:F.223
Hydrogen bonds:
A:Y.176
pi-Stacking:
A:Y.176
,
A:Y.176
1JT.5:
14 residues within 4Å:
Chain B:
A.112
,
F.113
,
A.114
,
L.119
,
Y.166
,
M.173
,
P.174
,
S.175
,
Y.176
,
A.216
,
I.220
,
F.223
,
M.226
Ligands:
NAD.6
13
PLIP interactions
:
13 interactions with chain B
Hydrophobic interactions:
B:A.112
,
B:L.119
,
B:Y.166
,
B:Y.176
,
B:Y.176
,
B:A.216
,
B:I.220
,
B:I.220
,
B:I.220
,
B:F.223
Hydrogen bonds:
B:Y.176
,
B:Y.176
pi-Stacking:
B:Y.176
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.2:
26 residues within 4Å:
Chain A:
G.33
,
L.35
,
S.39
,
I.40
,
V.60
,
C.82
,
D.83
,
V.84
,
S.110
,
I.111
,
A.112
,
F.113
,
I.138
,
L.164
,
T.165
,
Y.166
,
K.183
,
A.209
,
G.210
,
P.211
,
I.212
,
T.214
,
L.215
,
A.216
,
F.223
Ligands:
1JT.1
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:I.40
,
A:Y.166
,
A:Y.166
,
A:A.209
Hydrogen bonds:
A:G.33
,
A:I.40
,
A:D.83
,
A:V.84
,
A:I.111
,
A:A.112
,
A:K.183
,
A:I.212
,
A:I.212
,
A:T.214
,
A:A.216
Water bridges:
A:A.41
,
A:I.111
,
A:L.215
NAD.6:
27 residues within 4Å:
Chain B:
G.33
,
L.34
,
L.35
,
S.39
,
I.40
,
V.60
,
C.82
,
D.83
,
V.84
,
S.110
,
I.111
,
A.112
,
F.113
,
I.138
,
L.164
,
T.165
,
Y.166
,
K.183
,
A.209
,
G.210
,
P.211
,
I.212
,
T.214
,
L.215
,
A.216
,
F.223
Ligands:
1JT.5
20
PLIP interactions
:
20 interactions with chain B
Hydrophobic interactions:
B:I.40
,
B:Y.166
,
B:Y.166
,
B:A.209
Hydrogen bonds:
B:G.33
,
B:I.40
,
B:D.83
,
B:D.83
,
B:V.84
,
B:I.111
,
B:A.112
,
B:Y.176
,
B:K.183
,
B:I.212
,
B:I.212
,
B:A.216
Water bridges:
B:G.33
,
B:A.41
,
B:V.60
,
B:I.111
1 x
ACT
:
ACETATE ION
(Non-functional Binders)
ACT.3:
3 residues within 4Å:
Chain A:
F.113
,
P.115
,
R.116
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:R.116
Water bridges:
A:D.117
Salt bridges:
A:R.116
1 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.4:
3 residues within 4Å:
Chain A:
S.86
,
D.87
,
Q.88
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:S.86
,
A:D.87
,
A:Q.88
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Mehboob, S. et al., Structural and biological evaluation of a novel series of benzimidazole inhibitors of Francisella tularensis enoyl-ACP reductase (FabI). Bioorg.Med.Chem.Lett. (2015)
Release Date
2014-07-23
Peptides
Enoyl-[acyl-carrier-protein] reductase [NADH]:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Enoyl-[acyl-carrier-protein] reductase [NADH]
Toggle Identical (AB)
Related Entries With Identical Sequence
3nrc.1
|
3uic.1
|
3uic.2
|
3uic.3
|
3uic.4
|
4j1n.1
|
4j1n.2
|
4j3f.1
|
4j3f.3
|
4j3f.4
|
4j3f.5
|
4j3f.6
|
4j4t.1
|
4j4t.2
|
4j4t.3
|
4j4t.4
|
4j4t.5
|
4j4t.6
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme