SMTL ID : 4j6o.1 (1 other biounit)

Crystal Structure of the Phosphatase Domain of C. thermocellum (Bacterial) PnkP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 2 residues within 4Å: Chain A: H.259, H.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.260 Water bridges: A:E.258 Salt bridges: A:H.259 CIT.9: 13 residues within 4Å: Chain A: D.19, H.21, D.65, R.69, N.95, H.96, H.155, G.207, H.208, P.210, D.224 Ligands: GOL.6, MN.8 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.95 Water bridges: A:R.69, A:R.69, A:N.95 Salt bridges: A:H.21, A:R.69, A:R.69, A:H.96, A:H.96, A:H.113, A:H.155, A:H.208

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 10 residues within 4Å: Chain A: K.8, V.145, G.149, Q.163, G.164, Y.198, G.200, K.201, A.202 Ligands: PG4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.8, A:Q.163, A:K.201, A:A.202 Water bridges: A:K.201

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: K.33, L.34, R.237, E.242, I.243, V.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.243 Water bridges: A:K.33 PG4.4: 4 residues within 4Å: Chain A: E.160, E.161, Q.163 Ligands: PGE.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.160 Water bridges: A:E.161

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: E.178, T.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.178, A:T.179 Water bridges: A:G.177 GOL.6: 5 residues within 4Å: Chain A: N.95, H.96, K.99, H.113 Ligands: CIT.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.95, A:N.95 Water bridges: A:H.96, A:K.99, A:H.113 GOL.7: 1 residues within 4Å: Chain A: E.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.56

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.8: 4 residues within 4Å: Chain A: D.19, H.21, D.65 Ligands: CIT.9 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.19, A:H.21, A:D.65, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L.K. et al., Structure and mechanism of the 2',3' phosphatase component of the bacterial Pnkp-Hen1 RNA repair system. Nucleic Acids Res. (2013)

Release Date

2013-04-10

Peptides

Metallophosphoesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallophosphoesterase

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