SMTL ID : 4j6y.1

Hfq from Pseudomonas aeruginosa crystallized in GTP presence

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-hexamer

Ligands

12 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: H.57 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.57, H2O.1, H2O.1, H2O.2, H2O.2 CD.2: 1 residues within 4Å: Chain A: D.9 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.9, A:D.9, H2O.1 CD.3: 1 residues within 4Å: Chain B: H.57 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.57, H2O.2, H2O.2, H2O.2, H2O.3 CD.4: 2 residues within 4Å: Chain B: H.5, D.9 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.5, B:D.9, B:D.9, H2O.2 CD.5: 1 residues within 4Å: Chain C: H.57 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:H.57, H2O.2, H2O.3, H2O.3, H2O.3 CD.6: 2 residues within 4Å: Chain C: H.5, D.9 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.5, C:D.9, C:D.9, H2O.3 CD.7: 1 residues within 4Å: Chain D: H.57 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:H.57, H2O.3, H2O.4, H2O.4, H2O.4 CD.8: 1 residues within 4Å: Chain D: D.9 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.9, D:D.9, H2O.3 CD.9: 1 residues within 4Å: Chain E: H.57 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:H.57, H2O.4, H2O.5, H2O.5 CD.10: 2 residues within 4Å: Chain E: H.5, D.9 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.5, E:D.9, E:D.9, H2O.4 CD.11: 1 residues within 4Å: Chain F: H.57 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:H.57, H2O.1, H2O.1, H2O.5, H2O.5 CD.12: 2 residues within 4Å: Chain F: H.5, D.9 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.5, F:D.9, F:D.9, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murina, V. et al., Hfq binds ribonucleotides in three different RNA-binding sites. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-07-31

Peptides

Protein hfq: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Protein hfq

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