SMTL ID : 4jco.1

1.7 A resolution structure of wild type malate dehydrogenase from haloarcula marismortui

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

13 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: K.186, D.280 Chain D: T.192, D.193 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: R.147, R.228, H.232 Chain B: Y.55, D.56 Ligand excluded by PLIP CL.3: 7 residues within 4Å: Chain A: G.52, I.53, A.54, Y.55, D.56 Chain B: R.147, R.228 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: H.51, G.52 Chain B: R.147, A.151, G.225, G.229 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain B: K.186, W.279, D.280 Chain C: T.192, D.193 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: L.148, R.152, I.216, T.222 Ligand excluded by PLIP CL.18: 7 residues within 4Å: Chain C: G.52, I.53, A.54, Y.55, D.56 Chain D: R.147, R.228 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain B: T.192, D.193 Chain C: K.186, W.279, D.280 Ligand excluded by PLIP CL.20: 6 residues within 4Å: Chain C: R.147, R.228, H.232 Chain D: Y.55, D.56 Ligands: CL.30 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain C: L.148, R.152, I.216, T.222 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain A: T.192, D.193 Chain D: K.186, D.280 Ligand excluded by PLIP CL.29: 4 residues within 4Å: Chain D: L.148, R.152, I.216, T.222 Ligand excluded by PLIP CL.30: 8 residues within 4Å: Chain C: R.147, R.228 Chain D: G.52, I.53, A.54, Y.55, D.56 Ligands: CL.20 Ligand excluded by PLIP

26 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: D.28 Chain C: D.240 Ligand excluded by PLIP NA.6: 4 residues within 4Å: Chain A: G.71, S.72, N.111, D.113 Ligand excluded by PLIP NA.7: 3 residues within 4Å: Chain A: Y.131, E.132, G.134 Ligand excluded by PLIP NA.8: 2 residues within 4Å: Chain A: E.223 Chain B: E.223 Ligand excluded by PLIP NA.9: 2 residues within 4Å: Chain A: D.240 Chain C: D.28 Ligand excluded by PLIP NA.10: 3 residues within 4Å: Chain A: N.50, T.59 Chain B: Y.155 Ligand excluded by PLIP NA.13: 5 residues within 4Å: Chain A: V.165 Chain B: I.53, S.57, N.58, T.59 Ligand excluded by PLIP NA.14: 2 residues within 4Å: Chain B: S.72, D.113 Ligand excluded by PLIP NA.15: 2 residues within 4Å: Chain B: G.177, Q.180 Ligand excluded by PLIP NA.16: 2 residues within 4Å: Chain B: D.240 Chain D: D.28 Ligand excluded by PLIP NA.17: 4 residues within 4Å: Chain B: Y.131, E.132, A.133, G.134 Ligand excluded by PLIP NA.22: 2 residues within 4Å: Chain C: D.91, D.95 Ligand excluded by PLIP NA.23: 5 residues within 4Å: Chain C: Y.131, E.132, G.134 Ligands: NA.24, NA.27 Ligand excluded by PLIP NA.24: 5 residues within 4Å: Chain C: E.132, A.133, G.134 Ligands: NA.23, NA.27 Ligand excluded by PLIP NA.25: 2 residues within 4Å: Chain C: S.158, E.159 Ligand excluded by PLIP NA.26: 3 residues within 4Å: Chain C: D.193, P.194, E.195 Ligand excluded by PLIP NA.27: 4 residues within 4Å: Chain C: G.134, D.135 Ligands: NA.23, NA.24 Ligand excluded by PLIP NA.31: 3 residues within 4Å: Chain D: T.2, I.26, D.28 Ligand excluded by PLIP NA.32: 3 residues within 4Å: Chain C: Y.155 Chain D: N.50, T.59 Ligand excluded by PLIP NA.33: 2 residues within 4Å: Chain D: S.72, D.113 Ligand excluded by PLIP NA.34: 4 residues within 4Å: Chain D: Y.131, E.132, G.134 Ligands: NA.35 Ligand excluded by PLIP NA.35: 3 residues within 4Å: Chain D: E.132, G.134 Ligands: NA.34 Ligand excluded by PLIP NA.36: 5 residues within 4Å: Chain D: F.184, S.185, V.187, D.193, P.194 Ligand excluded by PLIP NA.37: 5 residues within 4Å: Chain C: W.224 Chain D: T.12, A.15, A.16, E.223 Ligand excluded by PLIP NA.38: 3 residues within 4Å: Chain C: R.60 Chain D: S.158, E.159 Ligand excluded by PLIP NA.39: 4 residues within 4Å: Chain D: G.8, G.11, D.34, K.38 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vellieux, F.M.D., 1.7 A resolution structure of wild type malate dehydrogenase from haloarcula marismortui. To be Published

Release Date

2013-03-20

Peptides

Malate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Malate dehydrogenase

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