SMTL ID : 4jfr.1

Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoyl phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-trimer

Ligands

2 x CP: PHOSPHORIC ACID MONO(FORMAMIDE)ESTER(Non-covalent)

CP.1: 11 residues within 4Å: Chain A: S.81, T.82, R.83, T.84, R.132, H.159, Q.162, C.299, L.300, R.344 Chain B: Q.108 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.82, A:R.83, A:T.84, A:T.84, A:T.84, A:R.132, A:Q.162, A:R.344, B:Q.108 Water bridges: A:Q.162 Salt bridges: A:R.83, A:R.132 CP.3: 11 residues within 4Å: Chain B: S.81, T.82, R.83, T.84, R.132, H.159, Q.162, C.299, L.300, R.344 Chain C: Q.108 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:T.82, B:R.83, B:T.84, B:T.84, B:T.84, B:R.132, B:C.299, B:R.344, C:Q.108 Salt bridges: B:R.83, B:R.132

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: K.36, L.37, F.158, P.160, S.197 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: K.36, L.37, F.158, P.160, S.197 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: K.36, L.37, F.158, P.160, S.197 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 1 residues within 4Å: Chain C: G.70 6 PLIP interactions: 1 interactions with chain C, 5 Ligand-Water interactions Metal complexes: C:G.70, H2O.11, H2O.11, H2O.11, H2O.11, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shabalin, I.G. et al., Crystal structures and kinetic properties of anabolic ornithine carbamoyltransferase from human pathogens Vibrio vulnificus and Bacillus anthracis. to be published

Release Date

2013-03-13

Peptides

Ornithine carbamoyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ornithine carbamoyltransferase

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