SMTL ID : 4jhc.1

Crystal structure of the uncharacterized Maf protein YceF from E. coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.29, T.30, S.31, R.34, P.50, K.73, S.89 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.30, A:T.30, A:S.31, A:R.34, A:K.73, A:S.89 GOL.6: 5 residues within 4Å: Chain A: E.183 Chain B: E.140, R.188, A.200, Q.203 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.188, B:R.188, B:A.200, B:Q.203, A:E.183 GOL.7: 7 residues within 4Å: Chain B: A.28, S.29, T.30, S.31, R.34, P.50, K.73 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.28, B:T.30, B:R.34, B:K.73

12 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: R.114, S.117 No protein-ligand interaction detected (PLIP) UNX.3: 1 residues within 4Å: Chain A: P.23 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: R.207 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: E.60, Q.64 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain B: C.93, Q.112 No protein-ligand interaction detected (PLIP) UNX.9: 4 residues within 4Å: Chain B: N.158, Y.159, V.160, R.161 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain B: P.23, N.131 No protein-ligand interaction detected (PLIP) UNX.11: 1 residues within 4Å: Chain B: R.57 No protein-ligand interaction detected (PLIP) UNX.12: 1 residues within 4Å: Chain B: P.103 No protein-ligand interaction detected (PLIP) UNX.13: 2 residues within 4Å: Chain B: N.108, L.111 No protein-ligand interaction detected (PLIP) UNX.14: 1 residues within 4Å: Chain B: H.136 No protein-ligand interaction detected (PLIP) UNX.15: 2 residues within 4Å: Chain B: Q.42, I.43 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tchigvintsev, A. et al., Biochemical and structural studies of conserved maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides. Chem.Biol. (2013)

Release Date

2013-03-20

Peptides

Maf-like protein YceF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maf-like protein YceF