SMTL ID : 4jig.1

Crystal structure of a putative dehydrogenase from Burkholderia cenocepacia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: S.24, Y.46, A.47, R.48, D.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.24, A:A.47, A:R.48, A:D.49 Water bridges: A:S.24 ACT.2: 2 residues within 4Å: Chain A: G.26, I.27 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.27 Water bridges: A:G.28, A:N.100 ACT.4: 5 residues within 4Å: Chain B: S.24, Y.46, A.47, R.48, D.49 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.24, B:A.47, B:R.48, B:D.49 Water bridges: B:S.24 ACT.5: 2 residues within 4Å: Chain B: G.26, I.27 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.27 Water bridges: B:G.28, B:N.100 ACT.7: 5 residues within 4Å: Chain C: S.24, Y.46, A.47, R.48, D.49 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.24, C:A.47, C:R.48, C:D.49 Water bridges: C:S.24 ACT.8: 2 residues within 4Å: Chain C: G.26, I.27 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.27 Water bridges: C:G.28, C:N.100 ACT.10: 5 residues within 4Å: Chain D: S.24, Y.46, A.47, R.48, D.49 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.24, D:A.47, D:R.48, D:D.49 Water bridges: D:S.24 ACT.11: 2 residues within 4Å: Chain D: G.26, I.27 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:I.27 Water bridges: D:G.28, D:N.100

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: I.103, V.104, A.105, M.121, Y.167, Y.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.105 Water bridges: A:I.103 GOL.6: 6 residues within 4Å: Chain B: I.103, V.104, A.105, M.121, Y.167, Y.170 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.105 Water bridges: B:I.103 GOL.9: 6 residues within 4Å: Chain C: I.103, V.104, A.105, M.121, Y.167, Y.170 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.105 Water bridges: C:I.103 GOL.12: 6 residues within 4Å: Chain D: I.103, V.104, A.105, M.121, Y.167, Y.170 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.105 Water bridges: D:I.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a putative dehydrogenase from Burkholderia cenocepacia. TO BE PUBLISHED

Release Date

2013-04-03

Peptides

Dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Dehydrogenase