SMTL ID : 4jit.1

Crystal Structure of E. coli XGPRT in complex with (S)-3-(Guanin-9-yl)pyrrolidin-N-ylacetylphosphonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

2 x 3ZF: {2-[(3S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)pyrrolidin-1-yl]-2-oxoethyl}phosphonic acid(Non-covalent)

3ZF.1: 13 residues within 4Å: Chain B: R.69, L.90, V.91, D.92, T.93, G.94, G.95, T.96, K.115, W.134, I.135, Q.137, D.140 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.69, B:D.92, B:T.93, B:T.93, B:T.93, B:G.94, B:G.95, B:T.96, B:T.96, B:K.115, B:I.135, B:I.135, B:I.135, B:D.140 Water bridges: B:Q.137 pi-Stacking: B:W.134 3ZF.2: 12 residues within 4Å: Chain C: R.69, L.90, V.91, D.92, T.93, G.94, G.95, T.96, K.115, W.134, I.135, Q.137 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:R.69, C:R.69, C:D.92, C:D.92, C:T.93, C:T.93, C:G.94, C:G.95, C:T.96, C:T.96, C:K.115, C:I.135, C:I.135, C:I.135 Water bridges: C:Q.137 pi-Stacking: C:W.134 pi-Cation interactions: C:W.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keough, D.T. et al., Inhibition of the Escherichia coli 6-oxopurine phosphoribosyltransferases by nucleoside phosphonates: potential for new antibacterial agents. J.Med.Chem. (2013)

Release Date

2014-12-24

Peptides

Xanthine phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Xanthine phosphoribosyltransferase

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