- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 18 residues within 4Å:- Chain A: D.7, A.70, G.71, E.72, G.73, K.74, T.75, T.76, G.113, G.114, E.301, N.382, A.383, F.384, P.385, W.412
- Ligands: XPO.3, MG.5
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:E.72, A:G.73, A:K.74, A:T.75, A:T.76, A:T.76, A:G.113, A:N.382, A:A.383
- Water bridges: A:T.75, A:T.75
- Salt bridges: A:K.74
- pi-Stacking: A:F.384, A:W.412
ADP.7: 19 residues within 4Å:- Chain B: E.9, A.70, G.71, E.72, G.73, K.74, T.75, T.76, K.108, G.113, G.114, E.301, N.382, A.383, F.384, P.385, W.412
- Ligands: XPO.8, MG.11
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:E.9, B:E.72, B:G.73, B:K.74, B:T.75, B:T.75, B:T.76, B:T.76, B:G.113, B:N.382, B:A.383
- Water bridges: B:K.74, B:T.75, B:W.412
- Salt bridges: B:K.74, B:K.108, B:K.108
- pi-Stacking: B:F.384, B:W.412
ADP.13: 18 residues within 4Å:- Chain C: D.7, A.70, G.71, E.72, G.73, K.74, T.75, T.76, G.113, G.114, E.301, N.382, A.383, F.384, P.385, W.412
- Ligands: XPO.14, MG.16
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:E.72, C:G.73, C:K.74, C:T.75, C:T.76, C:T.76, C:G.113, C:N.382, C:A.383
- Water bridges: C:T.75, C:T.75
- Salt bridges: C:K.74
- pi-Stacking: C:F.384, C:W.412
ADP.18: 19 residues within 4Å:- Chain D: E.9, A.70, G.71, E.72, G.73, K.74, T.75, T.76, K.108, G.113, G.114, E.301, N.382, A.383, F.384, P.385, W.412
- Ligands: XPO.19, MG.22
19 PLIP interactions:19 interactions with chain D- Hydrogen bonds: D:E.9, D:E.72, D:G.73, D:K.74, D:T.75, D:T.75, D:T.76, D:T.76, D:G.113, D:N.382, D:A.383
- Water bridges: D:K.74, D:T.75, D:W.412
- Salt bridges: D:K.74, D:K.108, D:K.108
- pi-Stacking: D:F.384, D:W.412
- 4 x XPO: formyl phosphate(Non-covalent)
XPO.3: 10 residues within 4Å:- Chain A: K.74, R.97, K.108, F.275, A.276, E.301, G.303, F.304
- Ligands: ADP.2, MG.5
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.97, A:R.97, A:A.276, A:F.304
- Water bridges: A:T.75, A:T.75
- Salt bridges: A:K.74, A:R.97, A:K.108
XPO.8: 9 residues within 4Å:- Chain B: K.74, R.97, F.275, A.276, E.301, G.303, F.304
- Ligands: ADP.7, MG.11
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.97, B:A.276, B:F.304
- Water bridges: B:R.97
- Salt bridges: B:K.74, B:R.97, B:K.108
XPO.14: 10 residues within 4Å:- Chain C: K.74, R.97, K.108, F.275, A.276, E.301, G.303, F.304
- Ligands: ADP.13, MG.16
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:R.97, C:R.97, C:A.276, C:E.301, C:F.304
- Water bridges: C:T.75, C:T.75
- Salt bridges: C:K.74, C:R.97, C:K.108
XPO.19: 9 residues within 4Å:- Chain D: K.74, R.97, F.275, A.276, E.301, G.303, F.304
- Ligands: ADP.18, MG.22
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:R.97, D:A.276, D:F.304
- Water bridges: D:R.97
- Salt bridges: D:K.74, D:R.97, D:K.108
- 4 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)
TOE.4: 4 residues within 4Å:- Chain A: R.162, I.164, E.194
- Chain C: G.185
No protein-ligand interaction detected (PLIP)TOE.9: 7 residues within 4Å:- Chain B: R.162, I.164, E.194, E.515
- Chain D: G.185, G.186
- Ligands: 1PE.21
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.194
TOE.15: 4 residues within 4Å:- Chain A: G.185
- Chain C: R.162, I.164, E.194
No protein-ligand interaction detected (PLIP)TOE.20: 7 residues within 4Å:- Chain B: G.185, G.186
- Chain D: R.162, I.164, E.194, E.515
- Ligands: 1PE.10
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.194
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 5 residues within 4Å:- Chain A: T.75, R.97, E.301
- Ligands: ADP.2, XPO.3
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.75, A:E.301, H2O.4, H2O.4
MG.11: 5 residues within 4Å:- Chain B: T.75, R.97, E.301
- Ligands: ADP.7, XPO.8
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.75, B:E.301, H2O.6, H2O.7
MG.16: 5 residues within 4Å:- Chain C: T.75, R.97, E.301
- Ligands: ADP.13, XPO.14
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:T.75, C:E.301, H2O.10, H2O.10
MG.22: 5 residues within 4Å:- Chain D: T.75, R.97, E.301
- Ligands: ADP.18, XPO.19
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:T.75, D:E.301, H2O.12, H2O.13
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.10: 9 residues within 4Å:- Chain B: G.186, V.191, P.192
- Chain D: P.161, R.162, P.192, R.193, E.194
- Ligands: TOE.20
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:E.194, D:E.194, D:E.194, B:G.186
1PE.21: 9 residues within 4Å:- Chain B: P.161, R.162, P.192, R.193, E.194
- Chain D: G.186, V.191, P.192
- Ligands: TOE.9
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:E.194, B:E.194, B:E.194, D:G.186
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Celeste, L.R. et al., Mechanism of N10-formyltetrahydrofolate synthetase derived from complexes with intermediates and inhibitors. Protein Sci. (2012)
- Release Date
- 2013-03-20
- Peptides
- Formate--tetrahydrofolate ligase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x XPO: formyl phosphate(Non-covalent)
- 4 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Celeste, L.R. et al., Mechanism of N10-formyltetrahydrofolate synthetase derived from complexes with intermediates and inhibitors. Protein Sci. (2012)
- Release Date
- 2013-03-20
- Peptides
- Formate--tetrahydrofolate ligase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B