SMTL ID : 4jm2.1

Crystal Structure of PGT 135 Fab in Complex with gp120 Core Protein from HIV-1 Strain JR-FL Bound to CD4 and 17b Fab

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.10 Å
Oligo State
hetero-1-1-1-1-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kong, L. et al., Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120. Nat.Struct.Mol.Biol. (2013)
Release Date
2013-05-29
Peptides
PGT 135 Heavy chain: A
PGT 135 Light chain: B
17b Light chain: C
17b Heavy chain: D
gp120: E
T-cell surface glycoprotein CD4: F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F

PGT 135 Heavy chain

PGT 135 Light chain

17b Light chain

17b Heavy chain

gp120

T-cell surface glycoprotein CD4

Related Entries With Identical Sequence

1g9m.1 | 1g9n.1 | 1gc1.1 | 1rz8.1 | 1rz8.2 | 1rzj.1 | 1rzk.1 | 1yyl.1 | 1yyl.2 | 1yym.1 | 1yym.2 | 2i5y.1 | 2i5y.2 | 2i60.1 | 2i60.2 | 2nxy.1 | 2nxz.1 | 2ny0.1 | 2ny1.1 | 2ny2.1 | 2ny3.1 | 2ny4.1 | 2ny5.1 | 2ny6.1 | 3j70.1 | 4h8w.1 | 4jm4.1 | 4nzr.1 | 4rqs.1 | 4rqs.2  more...