SMTL ID : 4jo5.1

CBM3a-L domain with flanking linkers from scaffoldin cipA of cellulosome of Clostridium thermocellum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: T.61, D.63, T.139, N.142, D.143 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.63, A:D.63, A:T.139, A:D.143, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.74, A.75, G.86, I.87, T.88, S.89 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.86, A:T.88, A:T.88, A:S.89, A:S.89

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: G.79, S.80, N.81, G.82, S.83 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.80, A:N.81, A:N.81, A:G.82, A:S.83, A:S.83, A:S.83 SO4.4: 2 residues within 4Å: Chain A: S.136, N.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.137, A:N.137

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: R.57, Y.108 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: E.154, W.155, D.156 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: V.62, G.64, Q.65 Ligand excluded by PLIP

1 x 1MZ: 1-METHYLIMIDAZOLE(Non-covalent)

1MZ.8: 5 residues within 4Å: Chain A: N.27, T.31, T.32, N.33, N.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yaniv, O. et al., Structure of a family 3a carbohydrate-binding module from the cellulosomal scaffoldin CipA of Clostridium thermocellum with flanking linkers: implications for cellulosome structure. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-07-17

Peptides

Cellulosome anchoring protein cohesin region: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulosome anchoring protein cohesin region