SMTL ID : 4jt9.1

Crystal Structure of human SIRT3 with ELT inhibitor 3 [14-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.142, C.145, C.166, C.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.142, A:C.145, A:C.166, A:C.169

1 x 1NS: 4-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide(Non-covalent)

1NS.2: 17 residues within 4Å: Chain A: A.32, S.35, I.40, D.42, F.43, Y.51, F.66, Q.114, N.115, I.116, D.117, H.134, V.178, F.179, F.180 Ligands: GOL.3, GOL.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.32, A:I.116, A:H.134 Hydrogen bonds: A:S.35, A:F.43, A:I.116, A:D.117, A:D.117, A:D.117 pi-Stacking: A:F.43, A:F.43

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.180, G.181, E.182, L.184 Ligands: 1NS.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.181, A:E.182 GOL.4: 6 residues within 4Å: Chain A: G.31, A.32, R.44, Q.114, N.115 Ligands: 1NS.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.32, A:Q.114 Water bridges: A:G.33, A:G.205

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: H.73 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Disch, J.S. et al., Discovery of Thieno[3,2-d]pyrimidine-6-carboxamides as Potent Inhibitors of SIRT1, SIRT2, and SIRT3. J.Med.Chem. (2013)

Release Date

2013-04-24

Peptides

NAD-dependent protein deacetylase sirtuin-3, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-3, mitochondrial

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