- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x TZD: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
TZD.2: 25 residues within 4Å:- Chain A: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain B: N.23, P.24, G.25, E.47, S.70, N.77
- Ligands: CA.1
20 PLIP interactions:18 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Y.433, A:L.461
- Hydrogen bonds: A:S.376, A:T.377, A:S.378, A:S.378, A:G.401, A:L.403, A:G.427, A:G.429, A:S.430, A:Y.433, A:N.455, A:T.457, A:G.459, A:A.460
- Water bridges: A:D.428, A:N.455, B:S.70, B:S.70
TZD.7: 25 residues within 4Å:- Chain A: N.23, P.24, G.25, E.47, S.70, N.77
- Chain B: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: CA.6
20 PLIP interactions:18 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Y.433, B:L.461
- Hydrogen bonds: B:S.376, B:T.377, B:S.378, B:S.378, B:G.401, B:L.403, B:G.427, B:G.429, B:S.430, B:Y.433, B:N.455, B:T.457, B:G.459, B:A.460
- Water bridges: B:D.428, B:N.455, A:S.70, A:S.70
TZD.12: 25 residues within 4Å:- Chain C: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain D: N.23, P.24, G.25, E.47, S.70, N.77
- Ligands: CA.11
20 PLIP interactions:18 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:Y.433, C:L.461
- Hydrogen bonds: C:S.376, C:T.377, C:T.377, C:S.378, C:S.378, C:G.401, C:L.403, C:G.427, C:G.429, C:S.430, C:N.455, C:T.457, C:G.459, C:A.460
- Water bridges: C:D.428, C:N.455, D:S.70, D:S.70
TZD.17: 25 residues within 4Å:- Chain C: N.23, P.24, G.25, E.47, S.70, N.77
- Chain D: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: CA.16
20 PLIP interactions:18 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Y.433, D:L.461
- Hydrogen bonds: D:S.376, D:T.377, D:T.377, D:S.378, D:S.378, D:G.401, D:L.403, D:G.427, D:G.429, D:S.430, D:N.455, D:T.457, D:G.459, D:A.460
- Water bridges: D:D.428, D:N.455, C:S.70, C:S.70
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 1 residues within 4Å:- Chain A: A.416
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:A.416, H2O.6, H2O.7, H2O.12
MG.4: 7 residues within 4Å:- Chain A: N.117, L.118, R.120
- Chain B: N.117, L.118, R.120
- Ligands: MG.9
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Metal complexes: A:N.117, A:L.118, A:R.120, B:N.117, B:L.118, B:R.120
MG.5: 3 residues within 4Å:- Chain A: R.184
- Chain C: N.186, D.187
No protein-ligand interaction detected (PLIP)MG.8: 1 residues within 4Å:- Chain B: A.416
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:A.416, H2O.29, H2O.31, H2O.36
MG.9: 7 residues within 4Å:- Chain A: N.117, L.118, R.120
- Chain B: N.117, L.118, R.120
- Ligands: MG.4
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Metal complexes: A:N.117, A:L.118, A:R.120, B:N.117, B:L.118, B:R.120
MG.10: 3 residues within 4Å:- Chain B: R.184
- Chain D: N.186, D.187
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Chain C: A.416
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:A.416, H2O.52, H2O.54, H2O.59
MG.14: 7 residues within 4Å:- Chain C: N.117, L.118, R.120
- Chain D: N.117, L.118, R.120
- Ligands: MG.19
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Metal complexes: C:N.117, C:L.118, C:R.120, D:N.117, D:L.118, D:R.120
MG.15: 3 residues within 4Å:- Chain A: N.186, D.187
- Chain C: R.184
No protein-ligand interaction detected (PLIP)MG.18: 1 residues within 4Å:- Chain D: A.416
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:A.416, H2O.76, H2O.77, H2O.82
MG.19: 7 residues within 4Å:- Chain C: N.117, L.118, R.120
- Chain D: N.117, L.118, R.120
- Ligands: MG.14
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Metal complexes: C:N.117, C:L.118, C:R.120, D:N.117, D:L.118, D:R.120
MG.20: 3 residues within 4Å:- Chain B: N.186, D.187
- Chain D: R.184
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His70Ser mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-04-17
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x TZD: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His70Ser mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-04-17
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A