- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.427, N.454, T.456
- Ligands: TPP.3
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.427, A:T.456, H2O.1
CA.6: 4 residues within 4Å:- Chain B: D.427, N.454, T.456
- Ligands: TPP.7
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.427, B:T.456, H2O.13
CA.8: 2 residues within 4Å:- Chain B: Q.420, L.510
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:L.510, H2O.18, H2O.20
CA.9: 4 residues within 4Å:- Chain C: D.427, N.454, T.456
- Ligands: TPP.10
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.427, C:T.456, H2O.22
CA.12: 4 residues within 4Å:- Chain D: D.427, N.454, T.456
- Ligands: TPP.13
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.427, D:T.456, H2O.33
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.3: 25 residues within 4Å:- Chain A: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Chain C: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: CA.2
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:Y.432, A:Y.457, A:L.460
- Hydrogen bonds: A:S.375, A:T.376, A:S.377, A:G.400, A:L.402, A:G.426, A:G.428, A:S.429, A:Y.432, A:N.454, A:G.458, A:A.459
- Water bridges: A:N.454, A:N.454, C:E.46
TPP.7: 25 residues within 4Å:- Chain B: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Chain D: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: CA.6
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:Y.432, B:L.460
- Hydrogen bonds: B:S.375, B:T.376, B:T.376, B:S.377, B:S.377, B:G.400, B:L.402, B:G.428, B:S.429, B:N.454, B:G.458, B:A.459
- Water bridges: B:D.427, B:D.427
TPP.10: 25 residues within 4Å:- Chain A: N.22, P.23, G.24, E.46, H.69, N.76
- Chain C: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Ligands: CA.9
19 PLIP interactions:18 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:Y.432, C:L.460
- Hydrogen bonds: C:S.375, C:T.376, C:T.376, C:S.377, C:S.377, C:G.400, C:L.402, C:G.426, C:G.428, C:S.429, C:Y.432, C:N.454, C:G.458, C:A.459
- Water bridges: C:D.427, C:N.454, A:H.69
TPP.13: 25 residues within 4Å:- Chain B: N.22, P.23, G.24, E.46, H.69, N.76
- Chain D: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Ligands: CA.12
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:Y.432, D:L.460
- Hydrogen bonds: D:S.375, D:T.376, D:T.376, D:S.377, D:S.377, D:G.400, D:L.402, D:G.428, D:S.429, D:N.454, D:G.458, D:A.459
- Water bridges: D:N.454, D:N.454
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: R.100, E.127, P.128, A.129
- Chain D: R.100, E.127, P.128, A.129
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:R.100, D:E.127, D:E.127, A:R.100
GOL.11: 8 residues within 4Å:- Chain B: R.100, E.127, P.128, A.129
- Chain C: R.100, E.127, P.128, A.129
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:R.100, B:E.127, B:E.127, C:R.100, C:P.128
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of His281Ala mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-01
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of His281Ala mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-01
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D