SMTL ID : 4juk.1

Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.2.1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-3-3-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.138, S.139, Q.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.139, A:Q.228 SO4.5: 3 residues within 4Å: Chain C: S.138, S.139, Q.228 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.139, C:Q.228 SO4.9: 3 residues within 4Å: Chain E: S.138, S.139, Q.228 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.139, E:Q.228

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.171, N.242, D.243, A.244 Chain C: S.223 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.244 Hydrogen bonds: A:N.171, A:N.242 NAG.3: 2 residues within 4Å: Chain A: K.28, N.29 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.28 Hydrogen bonds: A:N.29 NAG.4: 1 residues within 4Å: Chain A: N.292 No protein-ligand interaction detected (PLIP) NAG.6: 5 residues within 4Å: Chain C: N.171, N.242, D.243, A.244 Chain E: S.223 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.244 Hydrogen bonds: C:N.171, C:N.242 NAG.7: 2 residues within 4Å: Chain C: K.28, N.29 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.28 Hydrogen bonds: C:N.29 NAG.8: 1 residues within 4Å: Chain C: N.292 No protein-ligand interaction detected (PLIP) NAG.10: 5 residues within 4Å: Chain A: S.223 Chain E: N.171, N.242, D.243, A.244 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:A.244 Hydrogen bonds: E:N.171, E:N.242 NAG.11: 2 residues within 4Å: Chain E: K.28, N.29 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.28 Hydrogen bonds: E:N.29 NAG.12: 1 residues within 4Å: Chain E: N.292 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DuBois, R.M. et al., To be published. To be Published

Release Date

2014-05-07

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin HA1

Hemagglutinin HA2

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