SMTL ID : 4jul.1 (1 other biounit)

Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-3-3-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.171, N.242, A.244 Chain C: S.223 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: S.223 Chain E: N.171, N.242, A.244 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.242

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: Q.21, K.28, N.29 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.28 Hydrogen bonds: A:N.29 NAG.4: 1 residues within 4Å: Chain C: N.29 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.29 NAG.5: 4 residues within 4Å: Chain C: N.171, N.242, A.244 Chain E: S.223 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.171, C:N.242 NAG.6: 2 residues within 4Å: Chain E: K.28, N.29 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:K.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DuBois, R.M. et al., To be published. To be Published

Release Date

2014-05-07

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1

Hemagglutinin HA2

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