SMTL ID : 4jvf.1

The Crystal structure of PDE6D in complex with the inhibitor (s)-5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 17X: (2S)-2-(2-phenyl-1H-benzimidazol-1-yl)-2-(piperidin-4-yl)ethyl 1-(1-benzyl-1H-benzimidazol-2-yl)piperidine-4-carboxylate(Non-covalent)

17X.1: 19 residues within 4Å: Chain A: L.19, M.22, L.24, W.34, L.40, A.49, I.55, L.56, C.58, K.59, R.63, Q.80, V.82, E.90, W.92, I.111, I.131, L.149, Y.151 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.19, A:L.24, A:L.40, A:A.49, A:I.55, A:I.55, A:L.56, A:V.82, A:L.149, A:Y.151 Hydrogen bonds: A:C.58, A:R.63, A:Q.80, A:Y.151 pi-Stacking: A:W.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimmermann, G. et al., Small molecule inhibition of the KRAS PDEd interaction impairs oncogenic KRAS signalling. Nature (2013)

Release Date

2013-05-22

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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