SMTL ID : 4jzk.1 (1 other biounit)

Crystal Structure of Adenylate kinase of E. Coli with ADP/AMP bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: A.8, P.9, G.10, A.11, G.12, K.13, G.14, T.15, R.119, R.123, V.132, Y.133, H.134, F.137, G.198, K.200, P.201, V.202 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:Y.133, A:K.200 Water bridges: A:K.13, A:R.123, A:R.123, A:N.138 Salt bridges: A:K.13, A:R.123, A:R.123 pi-Cation interactions: A:R.119

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 16 residues within 4Å: Chain A: T.31, G.32, L.35, R.36, M.53, K.57, L.58, V.59, V.64, G.85, F.86, R.88, Q.92, R.156, D.158, R.167 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.31, A:K.57, A:V.59, A:R.88, A:Q.92, A:Q.92, A:R.167 Water bridges: A:K.13, A:K.13, A:S.30, A:G.32, A:G.32, A:R.36, A:R.156, A:D.158 Salt bridges: A:R.36, A:R.88, A:R.156 pi-Cation interactions: A:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, Y.-J. et al., Crystal structure of E. Coli Adenylate kinase with ADP and AMP bound. To be Published

Release Date

2014-04-30

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylate kinase

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