- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
CA.6: 2 residues within 4Å:- Chain A: E.307, S.330
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.307, A:E.307, A:S.330, H2O.1, H2O.1
CA.7: 2 residues within 4Å:- Chain A: D.378, E.380
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.378, A:E.380, A:E.380, H2O.1
CA.8: 2 residues within 4Å:- Chain A: Q.233, E.236
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.236
CA.9: 3 residues within 4Å:- Chain A: E.88, E.235, D.239
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.88, A:E.235, A:E.235, A:D.239, H2O.1
CA.10: 4 residues within 4Å:- Chain A: E.88, D.92, E.235, D.239
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.88, A:E.235, A:D.239
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.11: 4 residues within 4Å:- Chain A: D.378, E.380, S.381, E.385
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.378, A:E.380, A:E.385, H2O.1, H2O.2
MN.21: 3 residues within 4Å:- Chain A: K.317
- Ligands: IOD.19, IOD.20
No protein-ligand interaction detected (PLIP)- 9 x IOD: IODIDE ION(Non-functional Binders)
IOD.12: 3 residues within 4Å:- Chain A: G.122, V.124, R.125
Ligand excluded by PLIPIOD.13: 4 residues within 4Å:- Chain A: R.206, D.350, V.351, P.352
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain A: Q.62, H.65, T.68
Ligand excluded by PLIPIOD.15: 2 residues within 4Å:- Chain A: H.227, L.230
Ligand excluded by PLIPIOD.16: 7 residues within 4Å:- Chain A: L.178, L.179, I.180, P.181, A.182, L.355, F.357
Ligand excluded by PLIPIOD.17: 2 residues within 4Å:- Chain A: N.96, H.228
Ligand excluded by PLIPIOD.18: 2 residues within 4Å:- Chain A: D.35, H.251
Ligand excluded by PLIPIOD.19: 2 residues within 4Å:- Chain A: K.319
- Ligands: MN.21
Ligand excluded by PLIPIOD.20: 2 residues within 4Å:- Chain A: K.317
- Ligands: MN.21
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Waight, A.B. et al., Structural basis for alternating access of a eukaryotic calcium/proton exchanger. Nature (2013)
- Release Date
- 2013-05-08
- Peptides
- Vacuolar calcium ion transporter: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 9 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Waight, A.B. et al., Structural basis for alternating access of a eukaryotic calcium/proton exchanger. Nature (2013)
- Release Date
- 2013-05-08
- Peptides
- Vacuolar calcium ion transporter: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.