SMTL ID : 4k2g.1

Structure of Pseudomonas aeruginosa PvdQ bound to BRD-A33442372

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.54, E.56, R.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.56, A:E.56 Water bridges: A:R.141 EDO.2: 5 residues within 4Å: Chain A: A.69, Y.80, R.145, E.149 Chain B: M.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.80, A:Y.80, A:R.145 EDO.3: 4 residues within 4Å: Chain A: N.112, L.115, R.116, A.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.116 Water bridges: A:N.112 EDO.4: 7 residues within 4Å: Chain A: A.47, V.51, R.54, E.56, Y.60, W.130, R.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.54, A:R.132 Water bridges: A:R.54 EDO.5: 4 residues within 4Å: Chain A: E.70, L.71, D.72, D.157 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.72 Water bridges: A:D.72, A:D.72, A:D.157, A:D.157 EDO.6: 2 residues within 4Å: Chain B: P.40, G.41 No protein-ligand interaction detected (PLIP) EDO.7: 4 residues within 4Å: Chain B: L.43, D.44, N.166, Q.167 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.44, B:N.166 EDO.8: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Water bridges: B:H.121 EDO.9: 3 residues within 4Å: Chain B: T.156, R.157, A.246 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.156, B:R.157 Water bridges: B:T.156, B:T.156, B:A.248 EDO.10: 5 residues within 4Å: Chain B: L.364, D.365, G.437, D.438, A.450 No protein-ligand interaction detected (PLIP) EDO.11: 5 residues within 4Å: Chain B: Q.357, W.358, D.359, S.366, G.367 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.359, B:G.367 EDO.12: 3 residues within 4Å: Chain B: R.375, E.424, S.428 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.428, B:S.428 EDO.13: 7 residues within 4Å: Chain B: F.380, A.381, L.383, D.384, G.385, A.386, W.387 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.386, B:W.387 Water bridges: B:G.385 EDO.14: 5 residues within 4Å: Chain A: C.44, L.45 Chain B: S.504, D.505, P.506 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.45, A:S.124, A:S.124

1 x 1OQ: (2S)-(4-fluorophenyl)[6-(trifluoromethyl)pyridin-2-yl]ethanenitrile(Non-covalent)

1OQ.15: 17 residues within 4Å: Chain A: T.143, L.146, L.147 Chain B: F.24, M.30, F.32, L.50, L.53, N.57, I.58, H.68, V.158, L.159, W.162, P.185, W.186, V.187 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.24, B:F.32, B:L.50, B:L.50, B:L.53, B:W.162, B:P.185, B:W.186, B:W.186, A:L.146 Hydrogen bonds: B:W.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wurst, J.M. et al., Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine. Acs Chem.Biol. (2014)

Release Date

2014-06-18

Peptides

Acyl-homoserine lactone acylase PvdQ: A
Acyl-homoserine lactone acylase PvdQ: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-homoserine lactone acylase PvdQ

Acyl-homoserine lactone acylase PvdQ

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