SMTL ID : 4k4x.1 (3 other biounits)

Coxsackievirus B3 polymerase elongation complex (r2_form), rna

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x G- G: RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')(Non-covalent)

G-G.1: 5 residues within 4Å: Chain A: A.122, L.123, G.124 Chain B: C.8, A.9 Protein-ligand interaction information (PLIP) not available

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: E.7, F.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.7 Water bridges: A:E.7, A:D.11 GOL.3: 7 residues within 4Å: Chain A: P.243, F.246, A.247, D.267, C.270, N.271, R.284 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.267, A:D.267, A:N.271, A:R.284

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: D.233, D.330 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.330, H2O.1, H2O.5, H2O.6, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, P. et al., Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One (2013)

Release Date

2013-05-22

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-dependent RNA polymerase

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