SMTL ID : 4k7d.1 (2 other biounits)

Crystal Structure of Parkin C-terminal RING domains

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.15, C.19, C.77, H.80 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.15, A:C.19, A:C.77, A:H.80 ZN.2: 4 residues within 4Å: Chain A: C.31, C.34, C.61, C.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.31, A:C.34, A:C.61, A:C.66 ZN.3: 4 residues within 4Å: Chain A: C.103, C.106, C.125, C.128 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.103, A:C.106, A:C.125, A:C.128 ZN.4: 5 residues within 4Å: Chain A: C.118, H.122, C.154, A.156, C.158 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.118, A:H.122, A:C.154, A:C.158 ZN.5: 4 residues within 4Å: Chain A: C.197, C.202, C.217, C.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.197, A:C.202, A:C.217, A:C.225 ZN.6: 5 residues within 4Å: Chain A: R.213, C.230, C.233, H.238, C.242 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.230, A:C.233, A:H.238, A:C.242 ZN.7: 4 residues within 4Å: Chain A: C.283, C.286, C.301, C.306 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.283, A:C.286, A:C.301, A:C.306 ZN.8: 4 residues within 4Å: Chain A: C.311, C.314, C.322, H.326 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.311, A:C.314, A:C.322, A:H.326

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.9: 7 residues within 4Å: Chain A: V.51, L.52, P.54, N.55, A.71, E.72, F.73 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.54 Hydrogen bonds: A:N.55, A:F.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trempe, J.F. et al., Structure of parkin reveals mechanisms for ubiquitin ligase activation. Science (2013)

Release Date

2013-05-15

Peptides

E3 ubiquitin-protein ligase parkin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase parkin

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