- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.427, N.454, T.456
- Ligands: TPP.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.427, A:T.456, H2O.2
CA.7: 4 residues within 4Å:- Chain B: D.427, N.454, T.456
- Ligands: TPP.6
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.427, B:T.456, H2O.26
CA.12: 4 residues within 4Å:- Chain C: D.427, N.454, T.456
- Ligands: TPP.11
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.427, C:T.456, H2O.51
CA.17: 4 residues within 4Å:- Chain D: D.427, N.454, T.456
- Ligands: TPP.16
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.427, D:T.456, H2O.75
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 6 residues within 4Å:- Chain A: L.10, Q.14, S.139, H.143, L.173, R.176
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:S.139, A:H.143, A:L.173
MG.4: 7 residues within 4Å:- Chain A: N.116, L.117, R.119
- Chain B: N.116, L.117, R.119
- Ligands: MG.9
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Metal complexes: B:N.116, B:L.117, B:R.119, A:N.116, A:L.117, A:R.119
MG.5: 3 residues within 4Å:- Chain A: N.185, D.186
- Chain C: R.183
No protein-ligand interaction detected (PLIP)MG.8: 6 residues within 4Å:- Chain B: L.10, Q.14, S.139, H.143, L.173, R.176
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.139, B:H.143, B:L.173
MG.9: 7 residues within 4Å:- Chain A: N.116, L.117, R.119
- Chain B: N.116, L.117, R.119
- Ligands: MG.4
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Metal complexes: B:N.116, B:L.117, B:R.119, A:N.116, A:L.117, A:R.119
MG.10: 3 residues within 4Å:- Chain B: N.185, D.186
- Chain D: R.183
No protein-ligand interaction detected (PLIP)MG.13: 6 residues within 4Å:- Chain C: L.10, Q.14, S.139, H.143, L.173, R.176
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:S.139, C:H.143, C:L.173
MG.14: 7 residues within 4Å:- Chain C: N.116, L.117, R.119
- Chain D: N.116, L.117, R.119
- Ligands: MG.19
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Metal complexes: D:N.116, D:L.117, D:R.119, C:N.116, C:L.117, C:R.119
MG.15: 3 residues within 4Å:- Chain A: R.183
- Chain C: N.185, D.186
No protein-ligand interaction detected (PLIP)MG.18: 6 residues within 4Å:- Chain D: L.10, Q.14, S.139, H.143, L.173, R.176
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:S.139, D:H.143, D:L.173
MG.19: 7 residues within 4Å:- Chain C: N.116, L.117, R.119
- Chain D: N.116, L.117, R.119
- Ligands: MG.14
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Metal complexes: D:N.116, D:L.117, D:R.119, C:N.116, C:L.117, C:R.119
MG.20: 3 residues within 4Å:- Chain B: R.183
- Chain D: N.185, D.186
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His281Asn mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His281Asn mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A