- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.24 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.2: 25 residues within 4Å:- Chain A: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Chain C: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: CA.1
19 PLIP interactions:18 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.402, A:Y.432, A:Y.457, A:L.460
- Hydrogen bonds: A:S.375, A:T.376, A:T.376, A:S.377, A:S.377, A:G.400, A:L.402, A:G.426, A:G.428, A:S.429, A:G.458, A:I.459
- Water bridges: A:D.427, A:D.427, C:E.46
TPP.8: 25 residues within 4Å:- Chain B: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Chain D: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: CA.7
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:L.402, B:L.402, B:Y.432, B:Y.457, B:L.460
- Hydrogen bonds: B:S.375, B:T.376, B:T.376, B:S.377, B:G.400, B:L.402, B:G.428, B:S.429, B:Y.432, B:N.454, B:G.458, B:I.459
- Water bridges: B:D.427, B:N.454
TPP.12: 25 residues within 4Å:- Chain A: N.22, P.23, G.24, E.46, H.69, N.76
- Chain C: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Ligands: CA.11
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:L.402, C:Y.432, C:Y.457, C:I.459, C:L.460
- Hydrogen bonds: C:S.375, C:T.376, C:T.376, C:S.377, C:G.400, C:L.402, C:G.426, C:G.428, C:S.429, C:G.458, C:I.459
- Water bridges: C:D.427, C:N.454
TPP.15: 25 residues within 4Å:- Chain B: N.22, P.23, G.24, E.46, H.69, N.76
- Chain D: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Ligands: CA.14
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:Y.432, D:Y.457, D:I.459, D:L.460
- Hydrogen bonds: D:S.375, D:T.376, D:T.376, D:S.377, D:G.400, D:L.402, D:G.428, D:S.429, D:Y.432, D:N.454, D:G.458, D:I.459
- Water bridges: D:D.427, D:D.427
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 6 residues within 4Å:- Chain A: N.116, L.117, R.119
- Chain C: N.116, L.117, R.119
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain C- Metal complexes: A:N.116, A:L.117, A:R.119, C:N.116, C:L.117, C:R.119
MG.9: 6 residues within 4Å:- Chain B: N.116, L.117, R.119
- Chain D: N.116, L.117, R.119
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Metal complexes: B:N.116, B:L.117, B:R.119, D:L.117, D:R.119
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: D.17, D.37, F.38, R.39
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.38
GOL.5: 5 residues within 4Å:- Chain A: N.362, D.363, M.364, A.365, E.367
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.364
GOL.6: 2 residues within 4Å:- Chain A: N.362, D.363
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.362, A:D.363
GOL.10: 5 residues within 4Å:- Chain B: Q.420, P.446, L.510, S.511, A.512
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:P.446, B:L.510
GOL.13: 6 residues within 4Å:- Chain B: E.127, P.128, A.129
- Chain C: R.100, E.127, P.128
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:R.100, C:E.127, B:E.127
- Water bridges: C:E.127, C:E.127, B:E.127, B:E.127
GOL.16: 8 residues within 4Å:- Chain A: R.100, E.127, P.128, A.129
- Chain D: R.100, E.127, P.128, A.129
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:R.100, A:E.127, A:E.127, A:A.129, D:R.100, D:E.127
- Water bridges: A:E.127, D:E.127
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His281Tyr/Ala460Ile Double Mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-15
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.24 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His281Tyr/Ala460Ile Double Mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-15
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D