SMTL ID : 4ka8.1

Structure of Organellar OligoPeptidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.494, H.498, E.524, S.527 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.494, A:H.498, A:E.524, A:E.524

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: P.400, A.401, D.402, L.404, R.416 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.400, A:R.416 GOL.3: 5 residues within 4Å: Chain A: Q.528, E.531, N.532, R.565, E.643 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.532, A:R.565, A:E.643 Water bridges: A:N.705, A:N.705 GOL.4: 6 residues within 4Å: Chain A: D.28, F.29, Y.427, R.463, L.464, V.466 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.28, A:L.464, A:L.464 GOL.5: 4 residues within 4Å: Chain A: L.315, W.641, V.644, P.696 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.641 Water bridges: A:P.696

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: M.302, K.305, M.306, A.307 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.305, A:A.307

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: Q.119, K.121, R.166 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kmiec, B. et al., Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts. Proc. Natl. Acad. Sci. U.S.A. (2013)

Release Date

2013-09-18

Peptides

Oligopeptidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oligopeptidase A