SMTL ID : 4kf3.1 (1 other biounit)

Crystal Structure of Myotoxin II (MjTX-II), a myotoxic Lys49-phospholipase A2 from Bothrops moojeni.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

3 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.1: 3 residues within 4Å: Chain A: Y.111, P.114 Ligands: PE4.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.114 PE4.2: 16 residues within 4Å: Chain A: S.1, L.2, F.3, G.6, I.9, P.17, A.18, Y.21, N.27, C.28, G.29, C.44, H.47, K.61, R.63 Ligands: PE4.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.1, A:F.3, A:G.29, A:H.47 PE4.3: 8 residues within 4Å: Chain A: G.22, G.29, V.30, G.31, K.48, Y.51 Ligands: PE4.1, PE4.2 No protein-ligand interaction detected (PLIP)

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 4 residues within 4Å: Chain A: K.19, K.105, R.108 Ligands: IPA.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.108, A:R.108 IPA.5: 2 residues within 4Å: Chain A: R.33, K.52 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.33 Hydrogen bonds: A:R.33 IPA.6: 4 residues within 4Å: Chain A: N.16, K.19, S.20 Ligands: IPA.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.16, A:K.19 Hydrogen bonds: A:K.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salvador, G.H. et al., Structural and functional studies with mytoxin II from Bothrops moojeni reveal remarkable similarities and differences compared to other catalytically inactive phospholipases A2-like. Toxicon (2013)

Release Date

2013-07-17

Peptides

Basic phospholipase A2 homolog 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Basic phospholipase A2 homolog 2

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