SMTL ID : 4khr.1 (1 other biounit)

HCV NS5B GT1A C316Y with GSK5852

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.506, V.531, R.532, T.533 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.502, A:R.532, A:T.533 Salt bridges: A:R.506 SO4.2: 2 residues within 4Å: Chain A: G.517, R.518 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.518 Salt bridges: A:R.518 SO4.3: 5 residues within 4Å: Chain A: R.49, K.52, T.222, R.223, C.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.224 Salt bridges: A:R.49, A:K.52

1 x 1PV: [4-({[5-cyclopropyl-2-(4-fluorophenyl)-3-(methylcarbamoyl)-1-benzofuran-6-yl](methylsulfonyl)amino}methyl)-2-fluorophenyl]boronic acid(Non-covalent)

1PV.4: 15 residues within 4Å: Chain A: P.198, R.201, L.205, L.315, Y.317, D.320, V.322, I.364, S.366, C.367, S.369, L.385, M.415, F.416, Y.449 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.205, A:L.315, A:Y.317, A:V.322, A:L.385, A:Y.449, A:Y.449 Hydrogen bonds: A:R.201, A:R.201, A:S.366, A:S.366, A:Y.449 pi-Cation interactions: A:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maynard, A. et al., Discovery of a Potent Boronic Acid Derived Inhibitor of the HCV RNA-Dependent RNA Polymerase. J.Med.Chem. (2014)

Release Date

2013-05-29

Peptides

NS5B RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS5B RNA-dependent RNA polymerase

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