SMTL ID : 4knk.1 (1 other biounit)

Crystal structure of Staphylococcus aureus hydrolase AmiA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.69, H.174, D.188 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.69, A:H.174, A:D.188, H2O.1, H2O.9

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 5 residues within 4Å: Chain A: P.23, N.30, D.31, C.34, E.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.31 Water bridges: A:E.209

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: D.161, S.162, D.166, N.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.166 Water bridges: A:D.166

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 3 residues within 4Å: Chain A: Y.47, T.48, S.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.49

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: W.114, G.117, A.118, N.121 Ligands: EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.121 Water bridges: A:W.114, A:G.117, A:G.117, A:A.118

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: Q.90, W.114 Ligands: PEG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buttner, F.M. et al., Structure-function analysis of Staphylococcus aureus amidase reveals the determinants of peptidoglycan recognition and cleavage. J.Biol.Chem. (2014)

Release Date

2014-03-12

Peptides

Bifunctional autolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional autolysin

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