SMTL ID : 4krt.1 (1 other biounit)

X-ray structure of endolysin from clostridium perfringens phage phiSM101

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 9 residues within 4Å: Chain A: V.25, S.26, W.28, K.29, E.114, Y.148, Y.170, E.191, D.203 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.26, A:S.26 Water bridges: A:Y.146, A:E.191, A:E.191 Salt bridges: A:K.29, A:E.191, A:D.203

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: N.233, R.235, Y.282 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.282 Hydrogen bonds: A:N.233 Water bridges: A:N.233 Salt bridges: A:R.235 ACT.4: 5 residues within 4Å: Chain A: V.259, G.265, W.266, Y.267, A.280 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.265, A:W.266, A:Y.267 ACT.5: 3 residues within 4Å: Chain A: L.220, D.221, R.321 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.221 Water bridges: A:R.321 Salt bridges: A:R.321 ACT.6: 5 residues within 4Å: Chain A: G.85, A.86, K.87, D.88, E.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.86, A:K.87, A:D.88 ACT.7: 3 residues within 4Å: Chain A: F.218, N.222, M.288 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.218, A:N.222 ACT.8: 2 residues within 4Å: Chain A: E.51, F.55 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.55 Water bridges: A:W.28, A:K.48, A:R.81, A:R.81 Salt bridges: A:K.48 ACT.9: 3 residues within 4Å: Chain A: K.58, Y.59, Q.62 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.59 Hydrogen bonds: A:Q.62

1 x MLA: MALONIC ACID(Non-covalent)

MLA.3: 5 residues within 4Å: Chain A: L.298, N.299, R.301, L.306, W.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.299 Water bridges: A:R.301 Salt bridges: A:R.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamai, E. et al., X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens. Mol.Microbiol. (2014)

Release Date

2014-04-02

Peptides

Autolytic lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Autolytic lysozyme

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