SMTL ID : 4l1a.1

Crystallographic study of multi-drug resistant HIV-1 protease Lopinavir complex: mechanism of drug recognition and resistance

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AB1: N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE(Non-covalent)

AB1.1: 19 residues within 4Å: Chain A: R.8, N.25, G.27, A.28, D.29, D.30, I.50, T.80, P.81, T.82, V.84 Chain B: R.8, N.25, G.27, A.28, D.29, G.48, P.81, T.82 17 PLIP interactions: 7 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:P.81, B:T.82, A:D.29, A:D.30, A:I.50, A:P.81, A:T.82, A:V.84 Hydrogen bonds: B:N.25, B:N.25, B:G.27, B:D.29, B:D.29, A:R.8, A:G.27, A:D.29 Water bridges: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Crystallographic study of multi-drug resistant HIV-1 protease lopinavir complex: mechanism of drug recognition and resistance. Biochem.Biophys.Res.Commun. (2013)

Release Date

2014-04-02

Peptides

MDR769 HIV-1 protease: A
MDR769 HIV-1 protease: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MDR769 HIV-1 protease

MDR769 HIV-1 protease

Related Entries With Identical Sequence