SMTL ID : 4l3q.1

Crystal structure of glucokinase-activator complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 14 residues within 4Å: Chain A: S.143, F.144, P.145, T.160, K.161, N.196, D.197, I.217, G.221, C.222, N.223, E.248, Q.279, E.282 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.160, A:T.160, A:K.161, A:N.196, A:N.196, A:C.222, A:N.223, A:E.248, A:Q.279 Salt bridges: A:K.161

1 x 926: 6-{3-[(1-methyl-1H-imidazol-2-yl)sulfanyl]phenyl}pyridin-2(1H)-one(Non-covalent)

926.2: 13 residues within 4Å: Chain A: V.54, R.55, P.58, I.151, M.202, I.203, Y.206, Y.207, C.212, E.213, M.227, V.444, V.447 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.54, A:I.151, A:I.203, A:Y.206, A:V.444, A:V.447 Hydrogen bonds: A:R.55, A:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filipski, K.J. et al., Pyrimidone-based series of glucokinase activators with alternative donor-acceptor motif. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-07-24

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase