SMTL ID : 4l4s.1

Structural characterisation of the NADH binary complex of human lactate dehydrogenase M isozyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 22 residues within 4Å: Chain A: G.26, V.27, G.28, A.29, V.30, D.51, V.52, I.53, Y.82, T.94, A.95, G.96, R.98, I.115, I.119, V.135, S.136, N.137, S.160, L.164, H.192, I.251 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.30, A:I.251 Hydrogen bonds: A:V.27, A:A.29, A:V.30, A:V.52, A:Y.82, A:G.96, A:V.135, A:N.137, A:N.137, A:S.160 Water bridges: A:G.31 Salt bridges: A:R.98 NAI.2: 23 residues within 4Å: Chain B: V.25, V.27, G.28, A.29, V.30, D.51, V.52, I.53, T.94, A.95, G.96, R.98, I.115, F.118, I.119, V.135, S.136, N.137, V.139, S.160, L.164, H.192, I.251 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.30, B:I.251 Hydrogen bonds: B:V.27, B:A.29, B:V.30, B:G.31, B:V.52, B:Y.82, B:G.96, B:R.98, B:V.135, B:N.137, B:N.137, B:S.160 Water bridges: B:G.28, B:G.28 NAI.3: 22 residues within 4Å: Chain C: G.26, V.27, G.28, A.29, V.30, D.51, V.52, I.53, Y.82, T.94, A.95, G.96, R.98, I.115, I.119, V.135, S.136, N.137, S.160, L.164, H.192, I.251 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:V.30, C:I.251 Hydrogen bonds: C:V.27, C:A.29, C:V.30, C:V.52, C:G.96, C:V.135, C:N.137, C:N.137, C:S.160 Water bridges: C:G.28, C:G.31 Salt bridges: C:R.98 NAI.4: 23 residues within 4Å: Chain D: V.25, V.27, G.28, A.29, V.30, D.51, V.52, I.53, T.94, A.95, G.96, R.98, I.115, F.118, I.119, V.135, S.136, N.137, V.139, S.160, L.164, H.192, I.251 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:V.30, D:I.251 Hydrogen bonds: D:V.27, D:A.29, D:V.30, D:G.31, D:V.52, D:G.96, D:R.98, D:V.135, D:N.137, D:N.137, D:S.160 Water bridges: D:G.28, D:G.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dempster, S. et al., Structural characterization of the apo form and NADH binary complex of human lactate dehydrogenase. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-04-30

Peptides

L-lactate dehydrogenase A chain: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
A

C
H

D
A

L-lactate dehydrogenase A chain

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