SMTL ID : 4l6v.2 (2 other biounits)

Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

91 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.1: 8 residues within 4Å: Chain A: A.327, H.328, K.329, P.331, F.332 Ligands: LHG.10, CLA.31, CLA.48 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:P.331, A:F.332 CLA.11: 16 residues within 4Å: Chain A: S.438, N.441, W.442, I.445 Chain B: I.675, A.678, H.679, T.682, A.685 Ligands: CLA.38, CLA.39, PQN.55, BCR.63, CLA.105, BCR.110, CLA.113 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A, Hydrophobic interactions: B:I.675, B:I.675, B:T.682, B:A.685, A:I.445 pi-Stacking: B:H.679 Hydrogen bonds: A:N.441 CLA.12: 21 residues within 4Å: Chain A: F.452, I.456, F.540, F.596, W.597, N.600, I.642, Y.731 Chain B: W.645, L.648, F.649, H.651, L.652, W.654, A.655 Ligands: CLA.44, BCR.63, CLA.67, CLA.68, CLA.74, CLA.103 17 PLIP interactions: 11 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:F.452, A:F.452, A:I.456, A:I.456, A:F.540, A:F.540, A:F.596, A:W.597, A:W.597, A:I.642, A:Y.731, B:W.645, B:L.648, B:H.651, B:L.652, B:W.654, B:A.655 CLA.13: 17 residues within 4Å: Chain A: I.48, W.49, H.52 Chain F: S.9, V.83 Ligands: PQN.2, LHG.9, CLA.14, CLA.21, CLA.35, CLA.41, CLA.42, CLA.43, BCR.61, BCR.62, CLA.66, BCR.111 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain F, Hydrophobic interactions: A:I.48, F:V.83 CLA.14: 19 residues within 4Å: Chain A: W.28, H.33, F.34, L.51, A.55, H.56, F.58, A.75, G.78, H.79 Ligands: LHG.9, CLA.13, CLA.15, CLA.16, CLA.18, CLA.19, CLA.21, CLA.37, BCR.111 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:L.51, A:A.55 Metal complexes: A:H.56 CLA.15: 25 residues within 4Å: Chain A: H.56, F.58, I.72, A.75, H.76, H.79, L.80, V.83, F.84, L.87, M.168, W.348, H.349, Q.351, L.352, N.355, L.356, L.359 Ligands: BCR.5, BCR.6, CLA.14, CLA.16, CLA.23, CLA.32, CLA.37 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:H.56, A:F.58, A:I.72, A:I.72, A:A.75, A:L.80, A:V.83, A:F.84, A:L.87, A:W.348, A:Q.351, A:L.352, A:L.352 Hydrogen bonds: A:N.355 Salt bridges: A:H.79 pi-Stacking: A:H.79 Metal complexes: A:H.76 CLA.16: 14 residues within 4Å: Chain A: H.56, H.79, V.83, W.86, L.359, L.400 Ligands: BCR.6, LHG.9, CLA.14, CLA.15, CLA.18, CLA.35, CLA.36, CLA.37 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:V.83, A:W.86, A:W.86, A:L.359 Salt bridges: A:H.56 Metal complexes: A:H.79 CLA.17: 12 residues within 4Å: Chain A: V.85, W.86, S.88, G.89, F.92, H.93, F.97, Q.115, V.116, W.118 Ligands: CLA.18, CLA.19 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:V.85, A:F.92, A:F.92, A:F.97, A:W.118, A:W.118 pi-Stacking: A:F.97 Metal complexes: A:H.93 CLA.18: 23 residues within 4Å: Chain A: W.86, M.90, A.114, Q.115, I.137, Q.138, I.139, T.140, S.141, L.143, A.667, Y.668 Ligands: LHG.9, CLA.14, CLA.16, CLA.17, CLA.19, CLA.21, CLA.35, CLA.37, CLA.45, BCR.61, BCR.111 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:I.137, A:A.667, A:Y.668, A:Y.668 Hydrogen bonds: A:T.140, A:S.141, A:S.141 CLA.19: 17 residues within 4Å: Chain A: V.85, Q.115, V.116, V.117, W.118, Q.123, L.126, I.137, I.670 Chain B: V.440, F.444 Ligands: CLA.14, CLA.17, CLA.18, CLA.35, CLA.96, BCR.111 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:V.85, A:V.117, A:V.117, A:I.137, A:I.670, B:V.440, B:F.444 Hydrogen bonds: A:Q.115, A:W.118, A:Q.123 CLA.20: 12 residues within 4Å: Chain A: F.73, F.77, L.171, M.172, F.174, A.175, F.178, H.179, K.183, W.189 Ligands: CLA.22, CLA.23 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:F.73, A:F.77, A:F.77, A:L.171, A:F.174, A:A.175, A:F.178, A:W.189, A:W.189 Salt bridges: A:K.183 CLA.21: 19 residues within 4Å: Chain A: P.22, T.23, S.24, F.25, K.27, W.28, H.33, K.71, S.74, G.78, V.82, L.173, G.176, W.177, Y.180, H.181 Ligands: CLA.13, CLA.14, CLA.18 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:T.23, A:F.25, A:K.27, A:K.27, A:W.28, A:V.82, A:L.173, A:L.173, A:W.177, A:Y.180, A:Y.180 Hydrogen bonds: A:K.71 Salt bridges: A:H.33, A:K.71 Metal complexes: A:H.181 CLA.22: 11 residues within 4Å: Chain A: K.13, V.14, W.189, N.192, S.195, H.199, N.314, W.315 Ligands: CLA.20, CLA.23, CLA.29 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:V.14, A:W.315 Hydrogen bonds: A:K.13 Metal complexes: A:H.199 CLA.23: 18 residues within 4Å: Chain A: F.73, H.76, F.77, L.80, M.168, M.172, W.189, N.192, M.196, H.199, H.200, G.203, L.204 Ligands: BCR.6, CLA.15, CLA.20, CLA.22, CLA.32 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:F.73, A:F.73, A:L.80, A:W.189, A:W.189, A:M.196, A:H.199, A:L.204 Salt bridges: A:H.76 Metal complexes: A:H.200 CLA.24: 14 residues within 4Å: Chain A: G.151, F.152, Q.157, C.160, T.161, G.211, W.212, H.215, V.219, P.239, H.240 Ligands: BCR.5, CLA.25, CLA.46 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:F.152, A:W.212, A:W.212, A:H.215, A:H.240 CLA.25: 14 residues within 4Å: Chain A: L.210, G.214, I.217, H.218, I.243, P.246, F.256, G.259, L.260, Y.271, L.298 Ligands: BCR.4, BCR.5, CLA.24 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:L.210, A:I.217, A:I.243, A:F.256, A:L.260, A:L.260, A:Y.271, A:L.298 CLA.26: 16 residues within 4Å: Chain A: W.268, G.269, Y.271, S.272, L.275, F.277, H.295, L.298, A.299, V.302, N.500 Chain J: A.49 Ligands: BCR.4, CLA.27, CLA.52, CLA.118 17 PLIP interactions: 1 interactions with chain J, 16 interactions with chain A, Hydrophobic interactions: J:A.49, A:W.268, A:W.268, A:W.268, A:Y.271, A:Y.271, A:L.275, A:L.298, A:L.298, A:A.299, A:V.302, A:V.302 Hydrogen bonds: A:N.500 Salt bridges: A:H.295 pi-Stacking: A:W.268 pi-Cation interactions: A:H.295 Metal complexes: A:H.295 CLA.27: 19 residues within 4Å: Chain A: T.276, F.277, G.279, L.288, D.292, T.293, H.295, H.296, A.299, I.300, L.303, H.369, M.373, A.505 Ligands: CLA.26, CLA.28, CLA.34, CLA.51, CLA.52 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:F.277, A:F.277, A:D.292, A:T.293, A:A.299, A:I.300, A:L.303, A:A.505 pi-Stacking: A:H.296 CLA.28: 22 residues within 4Å: Chain A: A.149, L.205, G.208, S.209, W.212, Q.216, T.293, H.296, H.297, I.300, F.304, L.362, V.366, H.369, M.370, P.375, Y.376 Ligands: BCR.6, CLA.27, CLA.30, CLA.34, CLA.36 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:L.205, A:W.212, A:T.293, A:I.300, A:F.304, A:F.304, A:F.304, A:V.366, A:P.375 Hydrogen bonds: A:Y.376 Salt bridges: A:H.297 pi-Stacking: A:W.212 Metal complexes: A:H.297 CLA.29: 17 residues within 4Å: Chain A: N.198, H.199, A.202, G.203, L.207, I.305, H.309, T.313, W.315, I.317 Chain J: L.105, A.106, S.109 Ligands: BCR.4, BCR.5, BCR.6, CLA.22 9 PLIP interactions: 2 interactions with chain J, 7 interactions with chain A, Hydrophobic interactions: J:L.105, J:A.106, A:N.198, A:A.202, A:L.207, A:L.207, A:I.305, A:I.317 Metal complexes: A:H.309 CLA.30: 22 residues within 4Å: Chain A: M.197, L.201, L.205, L.303, F.304, A.307, M.310, Y.311, I.324, L.358, M.429, L.550, L.554 Ligands: BCR.7, BCR.8, CLA.28, CLA.31, CLA.32, CLA.33, CLA.34, CLA.47, CLA.48 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:L.201, A:L.205, A:A.307, A:L.358, A:L.550, A:L.554 Hydrogen bonds: A:Y.311 CLA.31: 18 residues within 4Å: Chain A: I.324, L.325, H.328, T.333, H.337, L.340, L.344, L.425, L.426, M.429 Ligands: CLA.1, BCR.7, LHG.10, CLA.30, CLA.32, CLA.40, CLA.48, CLA.49 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:T.333, A:L.340, A:L.340, A:L.344, A:L.425, A:L.426 Salt bridges: A:H.328, A:H.337 CLA.32: 24 residues within 4Å: Chain A: S.69, H.76, F.190, V.193, M.196, M.197, H.200, L.201, M.321, L.344, T.345, T.346, W.348, Q.351, I.354, N.355, L.358, L.359 Ligands: BCR.7, CLA.15, CLA.23, CLA.30, CLA.31, CLA.36 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:F.190, A:V.193, A:L.344, A:L.344, A:W.348, A:W.348, A:Q.351, A:I.354, A:N.355, A:L.358, A:L.358 Hydrogen bonds: A:H.200 Salt bridges: A:H.200 CLA.33: 17 residues within 4Å: Chain A: S.361, I.364, I.365, Q.368, M.394, I.401, I.542, T.545, A.546, S.601 Ligands: BCR.8, CLA.30, CLA.34, CLA.40, CLA.51, CLA.53, CLA.54 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.364, A:I.401, A:I.542, A:T.545, A:A.546 CLA.34: 17 residues within 4Å: Chain A: L.358, I.365, Q.368, H.369, Y.371, A.372, M.373, A.505, S.506, F.509 Ligands: BCR.8, CLA.27, CLA.28, CLA.30, CLA.33, CLA.51, CLA.53 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:L.358, A:Y.371, A:A.372, A:A.505, A:F.509, A:F.509 CLA.35: 19 residues within 4Å: Chain A: W.86, M.90, T.140, S.141, S.388, T.391, H.392, W.395, F.399, M.671, I.736, W.740 Ligands: CLA.13, CLA.16, CLA.18, CLA.19, CLA.36, CLA.43, BCR.61 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:W.395, A:F.399, A:I.736, A:W.740 pi-Stacking: A:W.740 Metal complexes: A:H.392 CLA.36: 20 residues within 4Å: Chain A: L.87, S.141, G.142, L.146, L.204, L.359, L.362, T.363, V.366, M.370, Y.376, L.389, H.392, H.393, I.396 Ligands: BCR.6, CLA.16, CLA.28, CLA.32, CLA.35 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:L.204, A:L.359, A:T.363, A:V.366, A:V.366, A:L.389, A:I.396 pi-Stacking: A:H.392, A:H.393 CLA.37: 27 residues within 4Å: Chain A: H.52, A.53, N.54, A.55, H.56, D.57, H.349, L.352, L.356, F.399, L.400, V.402, G.403, H.407, I.410, R.414, F.570, R.571, W.588 Ligands: LHG.9, CLA.14, CLA.15, CLA.16, CLA.18, CLA.43, CLA.45, BCR.61 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:D.57, A:L.352, A:L.352, A:L.356, A:L.356, A:V.402 Hydrogen bonds: A:A.55, A:H.56, A:D.57, A:R.571 Salt bridges: A:H.56, A:R.414, A:R.571 Metal complexes: A:H.407 CLA.38: 16 residues within 4Å: Chain A: H.439, W.442 Chain B: W.677, A.678, R.681, T.682, P.683 Chain H: H.19, L.20, T.22, I.24, S.25 Ligands: CLA.11, CLA.40, CLA.49, BCR.110 8 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B, 2 interactions with chain H, Hydrophobic interactions: A:W.442, A:W.442, B:W.677, B:R.681, B:T.682, H:I.24, H:I.24 Metal complexes: A:H.439 CLA.39: 17 residues within 4Å: Chain A: W.442, I.445, F.446, F.449, H.450 Ligands: CLA.11, CLA.50, CLA.54, PQN.55, BCR.63, CLA.68, CLA.105, CLA.106, BCR.109, BCR.110, CLA.114, BCR.115 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:W.442, A:F.449 Salt bridges: A:H.450 pi-Stacking: A:F.446 Metal complexes: A:H.450 CLA.40: 16 residues within 4Å: Chain A: I.436, L.440, W.442, V.443, A.539, I.542, H.543 Ligands: BCR.7, BCR.8, LHG.10, CLA.31, CLA.33, CLA.38, CLA.49, CLA.53, CLA.54 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:I.436, A:L.440, A:L.440, A:W.442, A:V.443 Salt bridges: A:H.543 CLA.41: 16 residues within 4Å: Chain A: I.700, A.703, H.704, L.707, V.709 Chain B: S.418, S.421, W.422, L.425 Chain F: G.62 Ligands: PQN.2, CLA.13, CLA.42, BCR.62, CLA.94, CLA.95 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:I.700, A:L.707, A:V.709, B:L.425 Metal complexes: A:H.704 CLA.42: 17 residues within 4Å: Chain A: T.45, I.48, W.49, I.700, V.701, H.704, V.709, P.711, P.715, R.716 Chain F: S.9, G.65, I.85, A.90 Ligands: PQN.2, CLA.13, CLA.41 9 PLIP interactions: 2 interactions with chain F, 7 interactions with chain A, Hydrophobic interactions: F:I.85, F:A.90, A:T.45, A:W.49, A:I.700, A:V.701, A:P.711, A:P.711, A:P.715 CLA.43: 23 residues within 4Å: Chain A: W.49, F.677, V.678, F.681, L.718, Q.722, A.725, V.726, A.729, H.730, L.733 Chain F: I.15, L.18 Ligands: PQN.2, LHG.9, CLA.13, CLA.35, CLA.37, CLA.45, BCR.61, BCR.62, CLA.66, BCR.111 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain F, Hydrophobic interactions: A:W.49, A:F.677, A:F.681, A:F.681, A:L.718, A:V.726, F:I.15, F:L.18 Hydrogen bonds: A:Q.722 CLA.44: 25 residues within 4Å: Chain A: I.537, T.541, Y.599, N.600, S.603, I.604, F.607, I.642, W.645, L.650, A.654, I.658, F.672, H.676, F.679, Y.731, G.735, T.738, T.739, F.742 Chain B: F.617, W.622 Ligands: CLA.12, CLA.45, CLA.67 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:I.537, A:T.541, A:I.604, A:I.604, A:I.642, A:W.645, A:W.645, A:L.650, A:A.654, A:I.658, A:F.672, A:F.679, A:F.679, A:T.738, A:F.742, B:F.617, B:F.617 Hydrogen bonds: A:Y.599, A:Y.731 pi-Stacking: A:F.672, A:F.679 Metal complexes: A:H.676 CLA.45: 25 residues within 4Å: Chain A: I.670, M.671, L.673, A.674, H.676, F.677, F.679, A.680 Chain B: V.436, L.522, F.578, W.579, N.582, W.586, L.613, F.617, L.621, F.710 Ligands: CLA.18, CLA.37, CLA.43, CLA.44, BCR.61, CLA.66, CLA.67 16 PLIP interactions: 8 interactions with chain B, 8 interactions with chain A, Hydrophobic interactions: B:V.436, B:L.522, B:W.579, B:W.579, B:W.586, B:L.613, B:F.710, A:I.670, A:A.674, A:F.677, A:F.677, A:F.677, A:F.679, A:A.680 pi-Stacking: B:W.586 Hydrogen bonds: A:F.677 CLA.46: 6 residues within 4Å: Chain A: C.160, L.238, H.240, I.243, L.244 Ligands: CLA.24 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:H.240, A:I.243, A:L.244 Salt bridges: A:H.240 pi-Stacking: A:H.240 CLA.47: 12 residues within 4Å: Chain A: I.306, H.309, M.310, R.312, G.318, H.319 Chain J: F.72, F.77 Ligands: BCR.4, CLA.30, CLA.48, CLA.118 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.306, A:M.310 Hydrogen bonds: A:G.318 Salt bridges: A:H.319 Metal complexes: A:H.319 CLA.48: 8 residues within 4Å: Chain A: H.319, I.324, A.327, H.328 Ligands: CLA.1, CLA.30, CLA.31, CLA.47 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:I.324 Hydrogen bonds: A:H.319 CLA.49: 17 residues within 4Å: Chain A: F.332, T.333, L.425, R.428, M.429, H.432, I.436, H.439 Chain H: V.8, L.20, T.22, P.23 Ligands: BCR.7, LHG.10, CLA.31, CLA.38, CLA.40 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain H, Hydrophobic interactions: A:L.425, A:H.439, H:V.8, H:T.22 Hydrogen bonds: A:R.428 Salt bridges: A:R.428, A:H.432 CLA.50: 28 residues within 4Å: Chain A: F.449, G.453, L.454, I.456, H.457, T.460, M.461, R.466, D.469, F.471 Chain B: H.95 Chain H: L.61, P.64, W.65, L.68, G.69, P.70, R.72, L.88 Ligands: CLA.39, CLA.68, CLA.74, CLA.103, BCR.109, BCR.110, CLA.113, CLA.114, BCR.116 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain H, Hydrophobic interactions: A:F.449, A:L.454, A:T.460, A:F.471, H:L.61, H:P.64, H:P.64, H:L.68, H:L.88 Hydrogen bonds: A:R.466 Salt bridges: A:H.457 Metal complexes: A:H.457 CLA.51: 13 residues within 4Å: Chain A: W.485, V.486, L.489, H.490, A.493, T.497, A.498 Ligands: BCR.8, CLA.27, CLA.33, CLA.34, CLA.52, CLA.53 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:W.485, A:V.486, A:L.489, A:T.497 Hydrogen bonds: A:T.497 pi-Stacking: A:H.490 CLA.52: 9 residues within 4Å: Chain A: F.277, T.497, A.498, P.499, N.500 Ligands: BCR.8, CLA.26, CLA.27, CLA.51 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:P.499 Hydrogen bonds: A:N.500, A:N.500, A:A.501 CLA.53: 19 residues within 4Å: Chain A: Q.368, Y.371, F.482, A.483, V.486, Q.487, F.509, I.525, L.527, H.535, H.538, V.605, H.608, F.609 Ligands: CLA.33, CLA.34, CLA.40, CLA.51, CLA.54 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:Y.371, A:F.482, A:A.483, A:I.525, A:L.527, A:H.538, A:H.608, A:F.609 Hydrogen bonds: A:Q.487 pi-Stacking: A:H.608 CLA.54: 17 residues within 4Å: Chain A: F.446, L.447, Q.479, P.480, I.481, F.482, A.483, F.532, H.535, H.536, A.539, H.543 Ligands: LHG.10, CLA.33, CLA.39, CLA.40, CLA.53 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:F.446, A:L.447, A:F.482 Hydrogen bonds: A:F.482, A:A.483 Salt bridges: A:H.535, A:H.536 pi-Stacking: A:F.532 Metal complexes: A:H.536 CLA.66: 26 residues within 4Å: Chain A: F.677, A.680, F.681, L.683, M.684, F.687, Y.692, W.693, L.696 Chain B: S.421, S.424, L.425, G.428, F.429, L.522, L.529, I.530, L.575, F.578, W.579 Ligands: PQN.2, CLA.13, CLA.43, CLA.45, BCR.61, BCR.62 18 PLIP interactions: 11 interactions with chain A, 7 interactions with chain B, Hydrophobic interactions: A:F.677, A:F.677, A:A.680, A:F.681, A:F.681, A:L.683, A:M.684, A:F.687, A:Y.692, A:W.693, B:L.425, B:F.429, B:I.530, B:L.575, B:L.575, B:F.578 Hydrogen bonds: A:Y.692 pi-Stacking: B:W.579 CLA.67: 24 residues within 4Å: Chain A: L.646, L.650, W.651 Chain B: Y.435, A.519, N.582, G.585, W.586, F.589, L.613, W.616, L.621, S.625, I.629, F.647, H.651, W.654, Y.714, T.717, Y.718, F.721 Ligands: CLA.12, CLA.44, CLA.45 22 PLIP interactions: 18 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:Y.435, B:Y.435, B:Y.435, B:A.519, B:W.586, B:W.586, B:F.589, B:L.613, B:W.616, B:W.616, B:L.621, B:I.629, B:F.647, B:W.654, B:W.654, B:F.721, A:L.646, A:L.650, A:L.650, A:W.651 pi-Stacking: B:F.647, B:W.654 CLA.68: 28 residues within 4Å: Chain A: N.441, C.444, I.445, G.448, F.449, F.452, G.453, F.540, L.547, I.548, L.593, F.596, W.597 Chain B: A.655, T.656, F.658, M.659, I.662, Y.667, W.668, L.671 Ligands: CLA.12, CLA.39, CLA.50, PQN.55, BCR.63, CLA.106, BCR.109 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain B, Hydrophobic interactions: A:I.445, A:F.449, A:F.449, A:F.452, A:I.548, A:L.593, A:F.596, B:A.655, B:F.658, B:I.662, B:Y.667, B:W.668 pi-Stacking: A:W.597 CLA.69: 19 residues within 4Å: Chain B: F.5, F.8, I.25, A.28, H.29, F.31, H.34, S.49, I.56 Chain I: F.23, S.26, L.29, Y.30 Ligands: LMG.64, CLA.70, CLA.71, CLA.92, BCR.115, BCR.117 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain I, Hydrophobic interactions: B:F.5, B:I.25, B:A.28, B:I.56, I:F.23, I:L.29, I:L.29, I:Y.30 Salt bridges: B:H.34, B:K.45 Metal complexes: B:H.29 CLA.70: 20 residues within 4Å: Chain B: H.29, F.31, I.46, S.49, H.50, H.53, I.54, I.57, L.328, H.329, Q.331, L.332, A.335, L.339 Ligands: BCR.57, CLA.69, CLA.71, CLA.77, CLA.87, CLA.92 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:F.31, B:F.31, B:I.46, B:I.46, B:I.54, B:L.328, B:L.328, B:L.328, B:Q.331, B:L.332, B:L.332, B:L.339 Salt bridges: B:H.53 pi-Stacking: B:H.53 Metal complexes: B:H.50 CLA.71: 15 residues within 4Å: Chain B: H.29, H.53, I.56, I.57, W.60, I.376, F.379 Ligands: BCR.57, LMG.64, CLA.69, CLA.70, CLA.72, CLA.90, CLA.91, CLA.92 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:I.56, B:I.57, B:W.60, B:W.60, B:W.60, B:I.376, B:F.379 Salt bridges: B:H.29 Metal complexes: B:H.53 CLA.72: 25 residues within 4Å: Chain B: I.56, L.59, W.60, S.62, G.63, F.66, H.67, W.70, Q.71, H.89, W.92, L.143 Chain G: L.10, P.11, L.14, I.15, V.18 Chain I: A.11, L.12, A.15 Ligands: CLA.71, CLA.73, CLA.103, BCR.109, BCR.117 15 PLIP interactions: 11 interactions with chain B, 1 interactions with chain I, 3 interactions with chain G, Hydrophobic interactions: B:I.56, B:L.59, B:L.59, B:F.66, B:W.70, B:W.70, B:L.143, I:A.15, G:L.14, G:I.15, G:V.18 Hydrogen bonds: B:Q.71 Salt bridges: B:H.67 pi-Cation interactions: B:H.67 Metal complexes: B:H.67 CLA.73: 16 residues within 4Å: Chain B: T.64, H.67, A.88, H.89, N.114, I.115, A.116, Y.117, S.118, V.642, W.643, M.646 Ligands: BCR.63, CLA.72, CLA.90, CLA.103 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:T.64, B:A.88, B:V.642, B:W.643 Hydrogen bonds: B:Y.117, B:S.118, B:S.118 Metal complexes: B:H.89 CLA.74: 16 residues within 4Å: Chain B: P.94, H.95 Chain G: I.15, G.19, W.20 Chain H: W.65, P.70, L.71, I.83, G.84, A.87 Ligands: CLA.12, CLA.50, CLA.103, BCR.109, BCR.110 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain G, Hydrophobic interactions: H:P.70, H:I.83, G:I.15, G:W.20 CLA.75: 11 residues within 4Å: Chain B: F.47, F.51, L.148, F.151, A.152, H.156, K.160, F.161, W.167 Ligands: CLA.76, CLA.77 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:F.47, B:F.51, B:L.148, B:F.151, B:A.152, B:W.167 CLA.76: 10 residues within 4Å: Chain B: W.167, N.170, S.173, H.177, N.294, W.295 Ligands: BCR.57, CLA.75, CLA.77, CLA.83 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:W.295, B:W.295 Hydrogen bonds: B:S.173 CLA.77: 20 residues within 4Å: Chain B: F.47, H.50, F.51, I.54, W.123, W.167, F.168, N.170, R.174, H.177, H.178, L.182, F.183, Y.356 Ligands: BCR.57, CLA.70, CLA.75, CLA.76, CLA.81, CLA.91 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:F.47, B:F.47, B:I.54, B:W.123, B:W.167, B:W.167, B:F.168, B:R.174, B:R.174, B:H.177, B:L.182, B:L.182, B:F.183, B:F.183, B:F.183 Hydrogen bonds: B:H.50 Salt bridges: B:H.50 Metal complexes: B:H.178 CLA.78: 18 residues within 4Å: Chain B: L.188, A.189, A.191, G.192, V.195, H.196, F.212, L.213, T.215, P.216, P.217, G.221, L.222, L.255, L.278 Ligands: BCR.56, BCR.58, CLA.104 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:L.188, B:A.191, B:V.195, B:P.217, B:L.255, B:L.278 CLA.79: 16 residues within 4Å: Chain B: F.225, W.230, G.231, A.234, L.255, T.256, F.257, L.258, H.275, L.278, A.279, G.487, A.488, A.489, W.490 Ligands: CLA.80 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:F.225, B:W.230, B:W.230, B:W.230, B:W.230, B:A.234, B:L.255, B:L.258, B:L.278, B:A.488, B:W.490 CLA.80: 20 residues within 4Å: Chain B: F.257, G.259, G.260, L.268, D.272, I.273, H.275, H.276, A.279, I.280, I.283, H.349, L.353, W.490, W.494 Ligands: CLA.79, CLA.81, CLA.89, CLA.97, CLA.98 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:F.257, B:F.257, B:F.257, B:F.257, B:L.268, B:L.268, B:D.272, B:H.275, B:A.279, B:I.280, B:W.490, B:W.490, B:W.494 Hydrogen bonds: B:G.260, B:H.349 Metal complexes: B:H.276 CLA.81: 23 residues within 4Å: Chain B: W.123, L.182, F.183, S.186, S.187, W.190, I.273, H.276, H.277, I.280, I.342, V.346, H.349, M.350, S.355, Y.356 Ligands: BCR.60, CLA.77, CLA.80, CLA.82, CLA.89, CLA.91, CLA.97 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:F.183, B:W.190, B:I.280, B:I.342, B:V.346 pi-Stacking: B:W.190, B:H.276 Metal complexes: B:H.277 CLA.82: 20 residues within 4Å: Chain B: L.175, L.179, F.183, I.283, F.284, A.287, M.290, Y.291, I.301, I.304 Ligands: BCR.59, BCR.60, LHG.65, CLA.81, CLA.84, CLA.85, CLA.86, CLA.87, CLA.89, CLA.99 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:L.175, B:L.179, B:F.183, B:F.284, B:A.287 CLA.83: 11 residues within 4Å: Chain B: H.177, A.180, G.181, V.185, H.289, Y.291, T.293, W.295, I.297 Ligands: BCR.56, CLA.76 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:A.180, B:V.185 Hydrogen bonds: B:T.293 CLA.84: 8 residues within 4Å: Chain B: I.286, H.289, M.290, G.298, H.299 Ligands: BCR.56, CLA.82, CLA.85 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:M.290 Hydrogen bonds: B:G.298 Salt bridges: B:H.299 CLA.85: 10 residues within 4Å: Chain B: M.290, H.299, I.304, A.307, H.308 Ligands: BCR.59, CLA.82, CLA.84, CLA.86, CLA.102 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:I.304, B:A.307 CLA.86: 15 residues within 4Å: Chain B: I.304, L.305, H.308, H.317, I.324, F.330, V.405, M.409 Ligands: BCR.59, LHG.65, CLA.82, CLA.85, CLA.87, CLA.93, CLA.102 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:L.305, B:I.324, B:F.330, B:V.405, B:V.405 Salt bridges: B:H.308 Metal complexes: B:H.317 CLA.87: 18 residues within 4Å: Chain B: A.171, R.174, L.175, H.178, L.179, I.301, L.305, Y.321, I.324, L.334, A.335, S.338, L.339, I.342 Ligands: CLA.70, CLA.82, CLA.86, CLA.89 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:A.171, B:I.301, B:L.305, B:Y.321, B:I.324, B:L.334, B:L.334, B:A.335, B:I.342 Hydrogen bonds: B:R.174 Salt bridges: B:H.178 CLA.88: 19 residues within 4Å: Chain B: V.341, S.344, L.345, Q.348, Q.374, G.378, M.381, F.385, L.524, T.527, L.531, M.580, L.587 Ligands: BCR.59, BCR.60, LHG.65, CLA.89, CLA.99, CLA.101 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:M.381, B:F.385, B:F.385, B:L.524, B:L.531, B:M.580, B:L.587 Hydrogen bonds: B:Q.348, B:Q.374 CLA.89: 19 residues within 4Å: Chain B: A.337, S.338, V.341, L.345, H.349, S.352, L.353, F.506 Ligands: BCR.59, BCR.60, LHG.65, CLA.80, CLA.81, CLA.82, CLA.87, CLA.88, CLA.97, CLA.99, CLA.101 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:A.337, B:V.341, B:V.341, B:F.506 pi-Cation interactions: B:H.349 CLA.90: 17 residues within 4Å: Chain B: W.60, T.64, S.118, A.368, T.371, H.372, Y.375, I.376, V.715, L.716, Y.718, A.719, L.722 Ligands: LMG.64, CLA.71, CLA.73, CLA.91 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:A.368, B:T.371, B:H.372, B:Y.375, B:I.376, B:V.715, B:L.716, B:Y.718, B:A.719, B:L.722 CLA.91: 26 residues within 4Å: Chain B: I.57, W.60, T.61, S.118, G.119, V.120, W.123, S.186, A.189, L.339, I.342, T.343, V.346, M.350, Y.356, L.369, H.372, H.373, I.376 Ligands: BCR.57, BCR.58, CLA.71, CLA.77, CLA.81, CLA.90, CLA.104 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:I.57, B:W.60, B:T.61, B:V.120, B:W.123, B:A.189, B:L.339, B:L.339, B:I.342, B:V.346, B:L.369, B:I.376 Hydrogen bonds: B:Y.356 pi-Stacking: B:H.372 CLA.92: 23 residues within 4Å: Chain B: A.26, T.27, A.28, H.29, D.30, E.32, H.329, L.332, L.336, F.379, G.383, H.387, I.390, R.394, Y.552, W.570, F.573 Ligands: BCR.63, LMG.64, CLA.69, CLA.70, CLA.71, CLA.106 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:D.30, B:L.332, B:L.332, B:L.336, B:F.573, B:F.573 Hydrogen bonds: B:H.29 Salt bridges: B:R.394 pi-Cation interactions: B:H.329 Metal complexes: B:H.387 CLA.93: 15 residues within 4Å: Chain B: L.312, T.313, V.405, R.408, M.409, E.411, H.412, A.415, L.416, H.419 Ligands: BCR.59, LHG.65, CLA.86, CLA.94, CLA.101 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:T.313, B:V.405, B:H.412, B:L.416, B:H.419 Salt bridges: B:R.408 pi-Stacking: B:H.412 CLA.94: 11 residues within 4Å: Chain A: W.702, K.706 Chain B: A.415, H.419, W.422 Ligands: CLA.41, LHG.65, CLA.93, CLA.95, CLA.100, CLA.101 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, Hydrophobic interactions: B:W.422, A:K.706 Metal complexes: B:H.419 Salt bridges: A:K.706 CLA.95: 12 residues within 4Å: Chain B: W.422, L.425, F.426, H.430 Chain F: S.51, A.58 Ligands: CLA.41, BCR.61, BCR.62, CLA.94, CLA.96, CLA.100 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain B, Hydrophobic interactions: F:S.51, F:A.58, B:W.422, B:F.426, B:F.426 pi-Stacking: B:H.430 CLA.96: 13 residues within 4Å: Chain A: V.121 Chain B: H.430, G.433, L.434, V.436, H.437, V.440, K.449 Chain F: Y.33 Ligands: CLA.19, BCR.61, BCR.62, CLA.95 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:L.434, B:V.440, A:V.121 Hydrogen bonds: B:K.449 Salt bridges: B:H.437, B:K.449 CLA.97: 13 residues within 4Å: Chain B: W.460, I.461, T.464, S.465, L.475, L.476, W.494 Ligands: BCR.60, CLA.80, CLA.81, CLA.89, CLA.98, CLA.99 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:W.460, B:W.460, B:I.461 CLA.98: 7 residues within 4Å: Chain B: L.475, I.482, T.486, W.490 Ligands: BCR.60, CLA.80, CLA.97 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:L.475, B:I.482, B:T.486 Hydrogen bonds: B:T.486 CLA.99: 23 residues within 4Å: Chain B: Q.348, Y.351, Y.370, F.457, A.458, I.461, Q.462, F.506, L.507, H.517, I.520, L.524, L.587, Y.590, W.591, K.594 Ligands: BCR.60, CLA.82, CLA.88, CLA.89, CLA.97, CLA.100, CLA.101 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:I.520, B:L.524, B:L.587, B:Y.590, B:Y.590, B:W.591, B:K.594 Hydrogen bonds: B:Q.462 CLA.100: 17 residues within 4Å: Chain B: V.423, F.426, L.427, E.454, P.455, V.456, F.457, A.458, F.514, H.517, H.518, A.521, H.525 Ligands: CLA.94, CLA.95, CLA.99, CLA.101 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:V.423, B:F.426, B:F.426, B:L.427, B:F.457, B:F.514, B:H.517, B:A.521 Hydrogen bonds: B:F.457, B:A.458 Salt bridges: B:H.517, B:H.518 pi-Stacking: B:F.514 CLA.101: 15 residues within 4Å: Chain B: L.416, L.420, W.422, V.423, A.521, H.525, I.532 Ligands: BCR.60, LHG.65, CLA.88, CLA.89, CLA.93, CLA.94, CLA.99, CLA.100 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:L.416, B:L.420, B:L.420, B:W.422, B:V.423, B:I.532 Salt bridges: B:H.525 pi-Cation interactions: B:H.525 CLA.102: 8 residues within 4Å: Chain B: H.308, K.309, P.311, L.312 Ligands: BCR.59, LHG.65, CLA.85, CLA.86 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:H.308, B:P.311 CLA.103: 30 residues within 4Å: Chain A: T.460, A.463, L.464 Chain B: H.89, I.91, W.92, D.93, H.95, F.96, F.104, N.114, S.641, V.642, W.645 Chain G: I.15, V.18, F.22, P.23, T.26, M.27 Ligands: CLA.12, CLA.50, BCR.63, LMG.64, CLA.72, CLA.73, CLA.74, CLA.106, BCR.109, BCR.115 11 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A, 1 interactions with chain G, Hydrophobic interactions: B:I.91, B:F.96, B:F.104, B:W.645, A:T.460, A:L.464, A:L.464, G:P.23 Hydrogen bonds: B:W.92 pi-Stacking: B:W.645 Metal complexes: B:D.93 CLA.104: 19 residues within 4Å: Chain B: I.127, G.128, M.129, E.134, G.138, F.141, S.186, A.189, W.190, H.193, H.196, V.197, V.207, G.208, W.209, F.212 Ligands: BCR.58, CLA.78, CLA.91 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:I.127, B:A.189, B:W.190, B:V.197, B:F.212 Hydrogen bonds: B:W.209 pi-Stacking: B:W.190, B:W.209 pi-Cation interactions: B:H.193 CLA.105: 24 residues within 4Å: Chain B: T.18, I.21, W.22, I.675, V.676, H.679, V.688, W.690, K.691, D.692, P.694, V.695 Chain G: F.31 Chain H: L.88, V.91, Y.99, V.102, T.103 Ligands: CLA.11, CLA.39, PQN.55, BCR.109, BCR.110, BCR.115 12 PLIP interactions: 9 interactions with chain B, 2 interactions with chain H, 1 interactions with chain G, Hydrophobic interactions: B:T.18, B:I.21, B:W.22, B:I.675, B:V.676, B:W.690, B:P.694, H:L.88, H:V.91, G:F.31 Hydrogen bonds: B:K.691, B:D.692 CLA.106: 18 residues within 4Å: Chain B: W.22, F.649, L.652, V.653, T.656, M.659, F.660, L.697, V.705, A.708, H.709 Ligands: CLA.39, PQN.55, BCR.63, LMG.64, CLA.68, CLA.92, CLA.103 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:W.22, B:F.649, B:L.652, B:V.653, B:L.697, B:V.705 CLA.112: 10 residues within 4Å: Chain H: F.33, N.36, L.37, R.41, E.52, M.55, A.56 Ligands: CLA.113, CLA.114, BCR.116 6 PLIP interactions: 6 interactions with chain H, Hydrophobic interactions: H:F.33, H:F.33, H:L.37, H:M.55, H:A.56 Metal complexes: H:E.52 CLA.113: 17 residues within 4Å: Chain B: L.684 Chain H: F.33, L.37, P.38, A.39, E.52, V.53, A.56, H.57, F.60 Ligands: CLA.11, CLA.50, BCR.110, CLA.112, CLA.114, BCR.115, BCR.116 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain B, Hydrophobic interactions: H:L.37, H:F.60, B:L.684 Hydrogen bonds: H:A.39 Metal complexes: H:H.57 CLA.114: 15 residues within 4Å: Chain H: Y.59, F.60, G.63, P.64, T.66, L.67, A.138, L.141, L.142, L.145 Ligands: CLA.39, CLA.50, CLA.112, CLA.113, BCR.116 9 PLIP interactions: 9 interactions with chain H, Hydrophobic interactions: H:Y.59, H:F.60, H:F.60, H:P.64, H:L.67, H:L.142, H:L.145 Hydrogen bonds: H:Y.59 pi-Stacking: H:F.60 CLA.118: 13 residues within 4Å: Chain A: W.268, I.306 Chain J: F.110, I.113, L.114, G.117, M.118, L.120, G.121, S.124 Ligands: BCR.4, CLA.26, CLA.47 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain J, Hydrophobic interactions: A:I.306, J:F.110, J:L.114, J:L.120 Hydrogen bonds: J:S.124 CLA.119: 9 residues within 4Å: Chain A: F.263, F.264 Chain J: S.59, I.62, I.63, L.66, M.108, H.112 Ligands: BCR.5 1 PLIP interactions: 1 interactions with chain J, Metal complexes: J:H.112

2 x PQN: PHYLLOQUINONE(Non-covalent)

PQN.2: 16 residues within 4Å: Chain A: W.49, M.684, F.685, S.688, R.690, W.693, A.717, L.718, G.723 Chain F: A.11 Ligands: CLA.13, CLA.41, CLA.42, CLA.43, BCR.62, CLA.66 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: A:W.49, A:F.685, A:F.685, A:L.718, A:L.718, F:A.11 Hydrogen bonds: A:S.688, A:L.718 pi-Stacking: A:W.693 PQN.55: 17 residues within 4Å: Chain B: W.22, M.659, F.660, S.663, W.664, R.665, W.668, A.696, L.697, A.702 Ligands: CLA.11, CLA.39, BCR.63, CLA.68, CLA.105, CLA.106, BCR.115 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.22, B:R.665, B:W.668, B:W.668, B:L.697, B:L.697, B:A.702 Hydrogen bonds: B:L.697 pi-Stacking: B:W.668

3 x SF4: IRON/SULFUR CLUSTER(Covalent)

SF4.3: 7 residues within 4Å: Chain A: C.574, P.577, C.583, I.720 Chain B: C.556, P.559, C.565 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, Metal complexes: B:C.556, B:C.565, A:C.574, A:C.583 SF4.107: 9 residues within 4Å: Chain C: C.21, P.22, V.25, C.48, V.49, C.51, K.52, C.54, V.67 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.21, C:C.48, C:C.51, C:C.54 SF4.108: 9 residues within 4Å: Chain C: C.11, I.12, G.13, C.14, T.15, Q.16, C.17, C.58, P.59 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.11, C:C.14, C:C.17, C:C.58

19 x BCR: BETA-CAROTENE(Non-covalent)

BCR.4: 17 residues within 4Å: Chain A: L.260, F.263, F.264, L.298, V.302, I.305, H.309 Chain J: F.77, A.106, S.109, F.110 Ligands: BCR.5, CLA.25, CLA.26, CLA.29, CLA.47, CLA.118 Ligand excluded by PLIP BCR.5: 15 residues within 4Å: Chain A: F.84, L.87, T.161, G.164, G.165, M.168, L.207, G.211 Ligands: BCR.4, BCR.6, CLA.15, CLA.24, CLA.25, CLA.29, CLA.119 Ligand excluded by PLIP BCR.6: 9 residues within 4Å: Chain A: L.207, G.208 Ligands: BCR.5, CLA.15, CLA.16, CLA.23, CLA.28, CLA.29, CLA.36 Ligand excluded by PLIP BCR.7: 12 residues within 4Å: Chain A: I.343, A.350, I.354, G.408, F.411 Ligands: BCR.8, LHG.10, CLA.30, CLA.31, CLA.32, CLA.40, CLA.49 Ligand excluded by PLIP BCR.8: 14 residues within 4Å: Chain A: A.357, L.358, S.361, I.401, G.405, L.549, L.550 Ligands: BCR.7, CLA.30, CLA.33, CLA.34, CLA.40, CLA.51, CLA.52 Ligand excluded by PLIP BCR.56: 8 residues within 4Å: Chain B: L.188, F.225, I.285, H.289, I.297 Ligands: CLA.78, CLA.83, CLA.84 Ligand excluded by PLIP BCR.57: 12 residues within 4Å: Chain B: I.57, F.58, F.149, G.181, L.182, V.185, S.186 Ligands: CLA.70, CLA.71, CLA.76, CLA.77, CLA.91 Ligand excluded by PLIP BCR.58: 9 residues within 4Å: Chain B: L.65, W.123, M.129, G.138, F.141, W.209 Ligands: CLA.78, CLA.91, CLA.104 Ligand excluded by PLIP BCR.59: 10 residues within 4Å: Chain B: M.409 Ligands: BCR.60, LHG.65, CLA.82, CLA.85, CLA.86, CLA.88, CLA.89, CLA.93, CLA.102 Ligand excluded by PLIP BCR.60: 19 residues within 4Å: Chain B: F.330, G.333, L.334, A.337, M.381, A.384, F.385, G.388, F.392 Ligands: BCR.59, LHG.65, CLA.81, CLA.82, CLA.88, CLA.89, CLA.97, CLA.98, CLA.99, CLA.101 Ligand excluded by PLIP BCR.61: 15 residues within 4Å: Chain A: F.677, L.733, I.736, V.737 Chain B: L.432 Ligands: CLA.13, CLA.18, CLA.35, CLA.37, CLA.43, CLA.45, BCR.62, CLA.66, CLA.95, CLA.96 Ligand excluded by PLIP BCR.62: 12 residues within 4Å: Chain B: F.429 Chain F: P.50, I.53, F.54 Ligands: PQN.2, CLA.13, CLA.41, CLA.43, BCR.61, CLA.66, CLA.95, CLA.96 Ligand excluded by PLIP BCR.63: 15 residues within 4Å: Chain A: I.445, F.449 Chain B: W.645, M.646, F.649, W.668 Ligands: CLA.11, CLA.12, CLA.39, PQN.55, CLA.68, CLA.73, CLA.92, CLA.103, CLA.106 Ligand excluded by PLIP BCR.109: 12 residues within 4Å: Chain G: V.18, G.19, F.22, P.23 Ligands: CLA.39, CLA.50, CLA.68, CLA.72, CLA.74, CLA.103, CLA.105, BCR.110 Ligand excluded by PLIP BCR.110: 14 residues within 4Å: Chain B: L.684 Chain G: W.20 Chain H: W.65, G.84, A.87, L.88 Ligands: CLA.11, CLA.38, CLA.39, CLA.50, CLA.74, CLA.105, BCR.109, CLA.113 Ligand excluded by PLIP BCR.111: 11 residues within 4Å: Chain A: W.118 Chain F: T.10, P.12, I.15, M.16, L.19 Ligands: CLA.13, CLA.14, CLA.18, CLA.19, CLA.43 Ligand excluded by PLIP BCR.115: 16 residues within 4Å: Chain B: F.5, I.25, V.688 Chain G: M.27, L.30 Chain H: A.92, A.95, L.96, Y.99, F.127 Ligands: CLA.39, PQN.55, CLA.69, CLA.103, CLA.105, CLA.113 Ligand excluded by PLIP BCR.116: 10 residues within 4Å: Chain H: F.33, M.55, A.56, Y.59, G.133, V.137 Ligands: CLA.50, CLA.112, CLA.113, CLA.114 Ligand excluded by PLIP BCR.117: 14 residues within 4Å: Chain B: G.52, I.56, L.59, L.150 Chain I: L.9, L.12, V.13, A.15, L.16, A.19, A.22, S.26 Ligands: CLA.69, CLA.72 Ligand excluded by PLIP

3 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.9: 22 residues within 4Å: Chain A: W.49, N.50, H.52, A.53, N.54, F.399, R.571, W.588, S.719, I.721, Q.722, A.725, V.728, A.729, L.733 Chain E: G.51 Ligands: CLA.13, CLA.14, CLA.16, CLA.18, CLA.37, CLA.43 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.399, A:A.725, A:V.728, A:L.733 Hydrogen bonds: A:N.54, A:N.54, A:R.571, A:S.719 Salt bridges: A:R.571, A:R.571 LHG.10: 13 residues within 4Å: Chain A: H.328, K.329, G.330, P.331, F.332, T.333, H.337 Ligands: CLA.1, BCR.7, CLA.31, CLA.40, CLA.49, CLA.54 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.332, A:T.333, A:T.333, A:H.337 LHG.65: 18 residues within 4Å: Chain B: H.308, K.309, G.310, P.311, L.312, T.313, H.317, V.405 Ligands: BCR.59, BCR.60, CLA.82, CLA.86, CLA.88, CLA.89, CLA.93, CLA.94, CLA.101, CLA.102 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.312, B:T.313, B:T.313

1 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

LMG.64: 23 residues within 4Å: Chain B: L.12, W.22, Y.23, I.25, A.26, T.27, S.553, W.570, F.573, S.698, V.700, Q.701, L.704, L.707, T.711, V.712, V.715 Ligands: CLA.69, CLA.71, CLA.90, CLA.92, CLA.103, CLA.106 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.22, B:I.25, B:A.26, B:F.573, B:Q.701, B:L.704, B:L.707, B:T.711, B:V.712, B:V.715 Hydrogen bonds: B:S.553, B:S.698

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mazor, Y. et al., Crystal structures of virus-like photosystem I complexes from the mesophilic cyanobacterium Synechocystis PCC 6803. Elife (2014)

Release Date

2014-02-05

Peptides

Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I subunit II: D
Photosystem I reaction center subunit IV: E
Fusion protein of Photosystem I subunit III and subunit IX: F
Photosystem I subunit III: G
Photosystem I reaction center subunit XI: H
Photosystem I reaction center subunit XII: I
Photosystem I reaction center subunit VIII: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

B
b

C
c

D
d

E
e

F
f

G
i

H
l

I
m

J
k

Membrane

We predict this structure to be a membrane protein.
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Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I subunit II

Photosystem I reaction center subunit IV

Fusion protein of Photosystem I subunit III and subunit IX

Photosystem I subunit III

Photosystem I reaction center subunit XI

Photosystem I reaction center subunit XII

Photosystem I reaction center subunit VIII

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