SMTL ID : 4l9o.1 (1 other biounit)

Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 4 residues within 4Å: Chain A: S.181, D.182, I.206 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.181, A:I.206 CA.2: 3 residues within 4Å: Chain A: Q.118, S.212 Ligands: EDO.5 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: R.27, V.76, A.120, W.121 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: A.263, P.266, S.313, W.314 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 10 residues within 4Å: Chain A: Q.118, S.164, V.165, S.166, A.210, A.211, S.212, D.261, V.262 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.118, A:S.212 Water bridges: A:S.212, A:S.212, A:D.261 EDO.6: 7 residues within 4Å: Chain A: S.181, D.182, G.183, I.206, G.207 Ligands: CA.1, EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.206, A:I.206 EDO.7: 5 residues within 4Å: Chain A: Q.159, D.182, K.184, Q.202 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.182 EDO.8: 11 residues within 4Å: Chain A: P.21, I.22, F.23, W.25, R.311, A.312, S.313, A.322, I.323, S.324, V.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.23, A:S.313, A:S.324, A:S.324 EDO.9: 10 residues within 4Å: Chain A: D.78, Y.79, Y.80, R.83, W.121, A.122, P.124, G.127, V.128, I.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.79, A:Y.80, A:A.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bharucha, N. et al., Sec16 influences transitional ER sites by regulating rather than organizing COPII. Mol Biol Cell (2013)

Release Date

2013-10-02

Peptides

Sec16,Protein transport protein SEC13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sec16,Protein transport protein SEC13

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